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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtacacaatttgtacaagacgtaattgaattaccgacttgaatttcttttggaatccgtagtgcctaaagtcttcttgcgctttctatacctccctgaagtaattttctattgttcccccttttttgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGGGTACTGGGAGGCGGCTAGATGGTAAGCCTGGCAAGCTTTCTACTGGTTC

Basic information

species Physcomitrella patens
transcript PP1S245_32V6.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208380268|gb|DC919104.1|DC919104
EST:     AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG                         ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: gi|100385818|gb|BY951012.1|BY951012
EST:     AGAAAGGGTTACTCCTNCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG                         ATGCCACACCACCTCCCTGAACCTGAGGAGCAAAAATTCAGTGCCCTCACG
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCC-TGAACCTGAGGAGCCAAAATTCAGTGCCTTCACG
EST: gi|208373274|gb|DC948562.1|DC948562
EST:     AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG                         ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: gi|208393488|gb|DC949650.1|DC949650
EST:     AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG                         ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: gi|208387770|gb|DC941339.1|DC941339
EST:     AGAAAGGGTTACTCCTCCCC-TGTTTCTGTTCCTGCTCAGTCATCACAAN                         ATGCCACACCACCTCCTGAACCTGAGGAG
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAG
EST: gi|67508675|gb|BJ941536.1|BJ941536
EST:     AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG                         ATGCCACACCACCTCCTGAACCTG
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTG
EST: gi|208349271|gb|DC906385.1|DC906385
EST:     AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG                         ATGCCACACCACCTCCTGAAC-TGAGGAGCNAAA-TTCA-TGCCTNCACGG
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: gi|162206110|gb|FC383103.1|FC383103
EST:     AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG                         ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: gi|208346232|gb|DC905221.1|DC905221
EST:     AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG                         ATGCCACACCACCTCCTGAACCTGAGGAGCCAAA-TTCAGTGCCTTCACGG
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: gi|208352262|gb|DC906337.1|DC906337
EST:     AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG                         ATGCCACACCACCTCCTGAACCTGAGGA
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGA
EST: gi|208395706|gb|DC920268.1|DC920268
EST:     AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG                         ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: gi|162206109|gb|FC383102.1|FC383102
EST:     AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG                         ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: gi|67691900|gb|BJ952133.1|BJ952133
EST:     AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG                         ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: gi|208366055|gb|DC935844.1|DC935844
EST:     AGAAAGGGTTACTCCTCCCC-TGTTTCTGTTCCTGCTCAGTCATCACAAG                         ATGCCACACCACCTCCTGA-CCTGA
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGA
EST: gi|208365926|gb|DC951155.1|DC951155
EST:     AGAAAGGGTTNCTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG                         ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: gi|162243302|gb|FC417003.1|FC417003
EST:     AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG                         ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: gi|208372135|gb|DC940317.1|DC940317
EST:     AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG                         ATGC-ACACCACCTCCTGA
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGA
EST: gi|208390049|gb|DC938104.1|DC938104
EST:     AGAAAGGGTTACTCCTCCCCCTGNTTCTGTTCCTGCTCAGTCATCACAAN                         ATGCCACACCACCTCCTGAACCTGAGGAGC
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGC
EST: gi|208394989|gb|DC920220.1|DC920220
EST:     AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG                         ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: gi|208358250|gb|DC930691.1|DC930691
EST:     AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG                         ATGCCACACCACCTCCTGA
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGA
EST: gi|208370760|gb|DC948269.1|DC948269
EST:     AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG                         ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: gi|208357678|gb|DC934130.1|DC934130
EST:     AGAAAGGGTTACTCCTCCCCCTGNTTCTGTTCCTGCTCAGTCATCACAAG                         ATGCCACACCACCTCCTGAACCTGAGG
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGG
EST: gi|208374165|gb|DC945211.1|DC945211
EST:     AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG                         ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: gi|208366022|gb|DC935839.1|DC935839
EST:     AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG                         ATGCCACACCACCTCCTGAACCTGAGGAGCCAAA-TTCAGTGCCTNCACGG
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: gi|208374981|gb|DC956391.1|DC956391
EST:     AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG                         ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: gi|208363142|gb|DC954342.1|DC954342
EST:     AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG                         ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: gi|18338628|gb|BJ170652.1|BJ170652
EST:     AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG                         ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: gi|208393483|gb|DC949645.1|DC949645
EST:     AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG                         ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: gi|208356440|gb|DC934430.1|DC934430
EST:     AGAAAGGGTTACTCCTCCCC-TGTTTCTGTTCCTGCTCAGTCATCACAAG                         ATGCCACACCACCTCCTGA
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGA
EST: gi|208386327|gb|DC932823.1|DC932823
EST:     AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG                         ATGCCACAC-ACCTCCTGAAC
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAAC
EST: gi|208387581|gb|DC953323.1|DC953323
EST:     AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG                         ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttctatacctccctgaagtaattttctattgttcccccttttttgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGGGTACTGGGAGGCGGCTAGATGGTAAGCCTGGCAAGCTTTCTACTGGTTC
                       ttttctattgttcccc  CT-rich tract
                                        ttttttgttaaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtacacaatttgtacaagacgtaattgaattaccgacttgaatttcttttggaatccgtagtgcctaaagtcttcttgcgctttctatacctccctgaagtaattttctattgttcccccttttttgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGGGTACTGGGAGGCGGCTAGATGGTAAGCCTGGCAAGCTTTCTACTGGTTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT