1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...attctggattgcctgagggatatttatcaaagtaatgttcaaatcttggtccttgcagtgctgtaattttaactagtattgagcctggcgatgttggcagATGGCAGTAGCAGCACGAAATGCTGAGGGTCATGGTTGGTTGCGACCTGCTCTTGGTGTTATGGAACTCTCTCAAAGTATCACACAG
species | Physcomitrella patens |
transcript | PP1S241_31V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTCAGCAAGTACTTCAGCTCACTCCCCGTTTGCTTGAGGAACTTATGAAG ATGGCAGTAGCAGCACGAAATGCTGAGGGTCATGGTTGGTTGCGACCTGCTEST: gi|67569617|gb|BJ942441.1|BJ942441
genomic: TTCAGCAAGTACTTCAGCTCACTCCCCGTTTGCTTGAGGAACTTATGAAGgtactggagt ... atgttggcagATGGCAGTAGCAGCACGAAATGCTGAGGGTCATGGTTGGTTGCGACCTGCT
EST: TTCAGCAAGTACTTCAGCTCACTCCCCGTTTGCTTGAGGAACTTATGAAG ATGGCAGTAGCAGCACGAAATGCTGAGGGTCATGGTTGGTTGCGACCTGCTEST: gi|162191838|gb|FC367987.1|FC367987
genomic: TTCAGCAAGTACTTCAGCTCACTCCCCGTTTGCTTGAGGAACTTATGAAGgtactggagt ... atgttggcagATGGCAGTAGCAGCACGAAATGCTGAGGGTCATGGTTGGTTGCGACCTGCT
EST: TTCAGCAAGTACTTCAGCTCACTCCCCGTTTGCTTGAGGAACTTATGAAG ATGGCAGTAGCAGCACGAAATGCTGAGGGTCATGGTTGGTTGCGACCTGCTEST: gi|162224033|gb|FC400391.1|FC400391
genomic: TTCAGCAAGTACTTCAGCTCACTCCCCGTTTGCTTGAGGAACTTATGAAGgtactggagt ... atgttggcagATGGCAGTAGCAGCACGAAATGCTGAGGGTCATGGTTGGTTGCGACCTGCT
EST: TTCAGCAAGTACTTCAGCTCACTCCCCGTTTGCTTGAGGAACTTATGAAG ATGGCAGTAGCAGCACGAAATGCTGAGGGTCATGGTTGGTTGCGACCTGCTEST: gi|100401075|gb|BY973089.1|BY973089
genomic: TTCAGCAAGTACTTCAGCTCACTCCCCGTTTGCTTGAGGAACTTATGAAGgtactggagt ... atgttggcagATGGCAGTAGCAGCACGAAATGCTGAGGGTCATGGTTGGTTGCGACCTGCT
EST: CAGCAAGTACTTCAGCTCACTCCCCGTTTGCTTGAGGAAAACT-ATGA-G ATGGCAGTAGCAGCACGAAATGCTGAGGGTCATGGTTGGGTGCGACCCTG
genomic: CAGCAAGTACTTCAGCTCACTCCCCGTTTGCTTGAGGAA--CTTATGAAGgtactggagt ... atgttggcagATGGCAGTAGCAGCACGAAATGCTGAGGGTCATGGTTGGTTGCGACC-TG
ttggtccttgcagtgctgtaattttaactagtattgagcctggcgatgttggcagATGGCAGTAGCAGCACGAAATGCTGAGGGTCATGGTTGGTTGCGACCTGCTCTTGGTGTTATGGAACTCTCTCAAAGTATCACACAG
ttttaac putative branch site (score: 3)
taattttaactagtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attctggattgcctgagggatatttatcaaagtaatgttcaaatcttggtccttgcagtgctgtaattttaactagtattgagcctggcgatgttggcagATGGCAGTAGCAGCACGAAATGCTGAGGGTCATGGTTGGTTGCGACCTGCTCTTGGTGTTATGGAACTCTCTCAAAGTATCACACAG
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