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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtattctgatgcaaacagccacattgcatggaggtttttgttaatgttcctagtttatcatgttccaaaatgatccaatttgcaatatttttttttgtcctgcagCCTGCGTAAGTCCAGCAGATGTAAATGCTGAAGAGTCGATCAATACCCTCAAGTATGCTAATAGGGCTCGTAACATTCGAAATAAGCCTACA

Basic information

species Physcomitrella patens
transcript PP1S237_18V6.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S237_18V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GRMZM2G026218_T02 (Zea mays), 3'ss of exon 7
-----------------------------------------------------------gtgagtattctgatgcaaacagccacattgcatggaggtt-tttgttaatgttcctagtttatcatgttccaaaatgatccaatttgcaatatttttttttgtcctgcagCCTGCGTAAGTCCAGCAGATGTAAATGCTGAAGAGTCGATCAATACCCTCAAGTATGCTAATAGGGCTCGTAACATTCGAAATAAGCCTACA
                                                            |||      ||||  | | |   |  |    |     || |||    |          ||          | | | | |  | ||  || || | ||||| ||||||||| ||| |||||||||||||| | |||||||||||| |  | || ||  | || ||||||||  |||| ||||| || | ||| ||||| |  
gtaatttatcttgtcggtgattgctccatgtttcttacattttacttggactatatttgctgatctaagtgatatagaaaattaagtccagtaatatttgtttaactacaaaaaagtgttgcttgagcttacactcacctgagtta-aacatatctttttctcctgcagCTTGCATAAGTCCAGCAGATATTAATGCTGAAGAGACATTAAACACTTTGAAATATGCTAACCGGGCACGTAATATCCAAAACAAGCCGATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtttatcatgttccaaaatgatccaatttgcaatatttttttttgtcctgcagCCTGCGTAAGTCCAGCAGATGTAAATGCTGAAGAGTCGATCAATACCCTCAAGTATGCTAATAGGGCTCGTAACATTCGAAATAAGCCTACA
                                   tatttttttttgtcct  CT-rich tract
                          aatttgcaatattttt  TA-rich tract