1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttatttcaagatctttaatcgttttgccaccatttgtgttttatatggaatgattggataaaatgattgtatctgtggaagtccgattctgaactgctgcctgttgagcaatcaaaaagtaggttttcctctacacttacgagcttctgtggggctgttgacagGATGCTGTTACAATGGTACAGAATATTCCAGATCCTGCAGAAGCCGCCAAGACCTTGACAGAGGAAGCCTATAAGAAAGGAAGCGCAGATAATATTACCT
species | Physcomitrella patens |
transcript | PP1S225_37V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGTTTTTGGTGATCGCAAGTGACGGTCTATGGGATGTTGTATCAAACCAG GATGCTGTTACAATGGTACAGAATATTCCAGATCCTGCAGAAGCCGCCAAGEST: gi|162279026|gb|FC454765.1|FC454765
genomic: AGTTTTTGGTGATCGCAAGTGACGGTCTATGGGATGTTGTATCAAACCAGgtttatttca ... ctgttgacagGATGCTGTTACAATGGTACAGAATATTCCAGATCCTGCAGAAGCCGCCAAG
EST: AGTTTTTGGTGATCGCAAGTGACGGTCTATGGGATGTTGTATCAAACCAG GATGCTGTTACAATGGTACAGAATATTCCAGATCCTGCAGAAGCCGCCAAGEST: gi|7286487|gb|AW598974.1|AW598974
genomic: AGTTTTTGGTGATCGCAAGTGACGGTCTATGGGATGTTGTATCAAACCAGgtttatttca ... ctgttgacagGATGCTGTTACAATGGTACAGAATATTCCAGATCCTGCAGAAGCCGCCAAG
EST: CGCAAGTGACGGTCTATGGGATGTTGTATCAAACCAG GATGCTGTTACAATGGTACAGAATATTCCAGATCCTGCAGAAGCCGCCAAGEST: gi|162249046|gb|FC421493.1|FC421493
genomic: CGCAAGTGACGGTCTATGGGATGTTGTATCAAACCAGgtttatttca ... ctgttgacagGATGCTGTTACAATGGTACAGAATATTCCAGATCCTGCAGAAGCCGCCAAG
EST: AGTTTTTGGTGATCGCAAGTGACGGTCTATGGGATGTTGTATCAAACCAG GATGCTGTTACAATGGTACAGAATATTCCAGATCCTGCAGAAGCCGCCAAGEST: gi|208351977|gb|DC925786.1|DC925786
genomic: AGTTTTTGGTGATCGCAAGTGACGGTCTATGGGATGTTGTATCAAACCAGgtttatttca ... ctgttgacagGATGCTGTTACAATGGTACAGAATATTCCAGATCCTGCAGAAGCCGCCAAG
EST: AGTTTTTGGTGATCGCAAGTGACGGTCTATGGGATGTTGTATCAAACCAG GATGCTGTTACAATGGTACAGAATATTCCAGATCCTGCAGAAGCCGCCAAGEST: gi|15730228|gb|BI741743.1|BI741743
genomic: AGTTTTTGGTGATCGCAAGTGACGGTCTATGGGATGTTGTATCAAACCAGgtttatttca ... ctgttgacagGATGCTGTTACAATGGTACAGAATATTCCAGATCCTGCAGAAGCCGCCAAG
EST: TCGCAAGTGACGGTCTATGGGATGTTGTATCAAACCAG GATGCTGTTACAATGGTACAGAATATTCCAGATCCTGCAGAAGCCGCCAAG
genomic: TCGCAAGTGACGGTCTATGGGATGTTGTATCAAACCAGgtttatttca ... ctgttgacagGATGCTGTTACAATGGTACAGAATATTCCAGATCCTGCAGAAGCCGCCAAG
aatcaaaaagtaggttttcctctacacttacgagcttctgtggggctgttgacagGATGCTGTTACAATGGTACAGAATATTCCAGATCCTGCAGAAGCCGCCAAGACCTTGACAGAGGAAGCCTATAAGAAAGGAAGCGCAGATAATATTACCT
cacttac putative branch site (score: 6)
aaaagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttatttcaagatctttaatcgttttgccaccatttgtgttttatatggaatgattggataaaatgattgtatctgtggaagtccgattctgaactgctgcctgttgagcaatcaaaaagtaggttttcctctacacttacgagcttctgtggggctgttgacagGATGCTGTTACAATGGTACAGAATATTCCAGATCCTGCAGAAGCCGCCAAGACCTTGACAGAGGAAGCCTATAAGAAAGGAAGCGCAGATAATATTACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT