Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttaatcttccgctcgaaactgttagaagactttatgctttactttcttcagagaaattcttaagttataaagcatcctgcagtgctgtttgttgagtgatctgtactcgttatgaatcgcagGTACATTATCTGCAAGGGGGCACAATTGAGATATACAGTAGAAATGCTGAACACAACACTGGGAAGTTTCCTGACATCGTTGCAGCAATGCCCAG

Basic information

species Physcomitrella patens
transcript PP1S223_54V6.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S223_54V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GLYMA12G08600.1 (Glycine max), 3'ss of exon 5
gtttaatcttccgctcgaaactgttagaagactttatgctttactttcttcagagaaattcttaagttataaagcatcctgcagtgctgtttgttgagtgatctgtactcgttatgaatcgcagGTACATTATCTGCAAGGGGGCACAATTGAGATATACAGTAGAAATGCTGAACACAACACTGGGAAGTTTCCTGACATCGTTGCAGCAATGCCCAG
                                        | |   |     |  ||||| |  |  |   || |||  | |  |  | | ||   | | |  | ||   ||  ||||   ||| ||||||| ||| |    ||  || ||||||| |||||||||||||| ||||  || |||||||||||||||||  | ||||| ||  |  | ||
---------------------------------------gtgatactacatggtcaaattttcca--tcagaaacatgatact-tattatgtgc--aataacat-tagctgtattgaa--acagATACATTACCTGGAGAATGGATCAGTTGAGATTTACAGTAGAAATGCAGAACGGAATACTGGGAAGTTTCCTGATGTTGTTGCCGCTGTTTCAAG

upper sequence: PP1S223_54V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: AT1G08130.1 (Arabidopsis thaliana), 3'ss of exon 5
gtttaatcttccgctcgaaactgttagaagactttatgctttactttcttcagagaaattcttaagttataaagcatcctgcagtgctgtttgttgagtgatctgt-actcgttatgaatcgcagGTACATTATCTGCAAGGGGGCACAATTGAGATATACAGTAGAAATGCTGAACACAACACTGGGAAGTTTCCTGACATCGTTGCAGCAATGCCCAG
                            | | ||  || | ||||   ||  ||  ||| ||    || | |   ||     | |  |   | | |  ||   | | |    | |      |||| |||||| | || | |  || ||| |||||||||||||| |||||||||||   |||||||||||||  || ||  | | |   ||  |  | ||
-------------------------gtgatatttggtg-tctactgaattaggatgaatgct---attcttagatatgagttatt--taaatatggtatggcttatcatcaatcaatttctgcagATACATTTTATGGAGGATGGTACATTTGAGATATACAGTCGAAATGCTGAAAGAAACACTGGGAAGTACCCGGATGTTGCTCTTGCGTTATCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaagcatcctgcagtgctgtttgttgagtgatctgtactcgttatgaatcgcagGTACATTATCTGCAAGGGGGCACAATTGAGATATACAGTAGAAATGCTGAACACAACACTGGGAAGTTTCCTGACATCGTTGCAGCAATGCCCAG
                                          ttatgaat  TA-rich tract