1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gcatggttccagatatttgtttgctttctgacatatttttctgtcttcaaagcgcgattcatttaattttcctaaattaactagtttcttttcttcgcagGGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTTGAGAAGGCTGGATCTCAGCACAGCTGGAAGCATATCACTGATCAG
species | Physcomitrella patens |
transcript | PP1S223_31V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCTGGTACAAAGAAGTTAAG GAAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTTEST: gi|7286670|gb|AW599157.1|AW599157
genomic: TCTGGTACAAAGAAGTTAAGgtaagcattt ... ttcttcgcagGGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTT
EST: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAG GGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTTEST: gi|162192505|gb|FC371696.1|FC371696
genomic: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAGgtaagcattt ... ttcttcgcagGGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTT
EST: CCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAG GGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTTEST: gi|37845929|gb|BJ603937.1|BJ603937
genomic: CCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAGgtaagcattt ... ttcttcgcagGGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTT
EST: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAG GGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTTEST: gi|208369208|gb|DC955837.1|DC955837
genomic: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAGgtaagcattt ... ttcttcgcagGGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTT
EST: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAG GGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTTEST: gi|37822610|gb|BJ580676.1|BJ580676
genomic: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAGgtaagcattt ... ttcttcgcagGGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTT
EST: CCATTTTGGAGGACCCTGAACTTAAGTCCNTCTGGTACAAAGAAGTTAAG GGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTTEST: gi|37827861|gb|BJ585873.1|BJ585873
genomic: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAGgtaagcattt ... ttcttcgcagGGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTT
EST: TGGTACAAAGAAGTTAAG GGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTTEST: gi|162164021|gb|FC339309.1|FC339309
genomic: TGGTACAAAGAAGTTAAGgtaagcattt ... ttcttcgcagGGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTT
EST: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAG GGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTTEST: gi|19789721|gb|BQ041471.1|BQ041471
genomic: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAGgtaagcattt ... ttcttcgcagGGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTT
EST: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAG GGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTEST: gi|162221031|gb|FC398283.1|FC398283
genomic: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAGgtaagcattt ... ttcttcgcagGGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGT
EST: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAG GGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTTEST: gi|162221032|gb|FC398284.1|FC398284
genomic: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAGgtaagcattt ... ttcttcgcagGGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTT
EST: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAG GGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTTEST: gi|162198688|gb|FC373469.1|FC373469
genomic: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAGgtaagcattt ... ttcttcgcagGGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTT
EST: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAG GGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTTEST: gi|162257989|gb|FC434083.1|FC434083
genomic: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAGgtaagcattt ... ttcttcgcagGGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTT
EST: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAG GGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTTEST: gi|7286761|gb|AW599248.1|AW599248
genomic: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAGgtaagcattt ... ttcttcgcagGGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTT
EST: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAG GGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTTEST: gi|208348127|gb|DC916937.1|DC916937
genomic: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAGgtaagcattt ... ttcttcgcagGGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTT
EST: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAG GGAATGGCTGACCGTATCATCGGCATGCGCGAGACACTCCGTACCAATCTTEST: gi|67724754|gb|BJ975013.1|BJ975013
genomic: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAGgtaagcattt ... ttcttcgcagGGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTT
EST: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAG GGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTTEST: gi|37852295|gb|BJ610303.1|BJ610303
genomic: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAGgtaagcattt ... ttcttcgcagGGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTT
EST: CTGGTACAAAGAAGTTAAG GGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTTEST: gi|67725499|gb|BJ975758.1|BJ975758
genomic: CTGGTACAAAGAAGTTAAGgtaagcattt ... ttcttcgcagGGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTT
EST: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAG GGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTTEST: gi|162256779|gb|FC432673.1|FC432673
genomic: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAGgtaagcattt ... ttcttcgcagGGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTT
EST: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAG GGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTTEST: gi|162244629|gb|FC423452.1|FC423452
genomic: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAGgtaagcattt ... ttcttcgcagGGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTT
EST: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAG GGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTT
genomic: CCATTTTGGAGGACCCTGAACTTAAGTCCCTCTGGTACAAAGAAGTTAAGgtaagcattt ... ttcttcgcagGGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTT
ttcaaagcgcgattcatttaattttcctaaattaactagtttcttttcttcgcagGGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTTGAGAAGGCTGGATCTCAGCACAGCTGGAAGCATATCACTGATCAG
aattaac putative branch site (score: 4)
ctagtttcttttcttc CT-rich tract
attcatttaattttcc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatggttccagatatttgtttgctttctgacatatttttctgtcttcaaagcgcgattcatttaattttcctaaattaactagtttcttttcttcgcagGGAATGGCTGACCGTATCATCGGCATGCGTGAGACACTCCGTACCAATCTTGAGAAGGCTGGATCTCAGCACAGCTGGAAGCATATCACTGATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG