Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcgcagtttcgttgcagttgattttcccgaagattatgaaaactaggagtttttttctgacagattctctaacttttttcatcatattctttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG

Basic information

species Physcomitrella patens
transcript PP1S21_270V6.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S21_270V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GLYMA14G36280.1 (Glycine max), 3'ss of exon 7
-gcgcagtttcgttgcagttgattttcccgaagattatgaaaactaggagtttttttctgacagattctctaacttttttcatcatattctttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG
 | |  |    |||  | |     ||  | |||           |      | ||   ||| |  |||    | ||  || |   ||||   | ||| ||| ||||||| || ||| |||| || || ||||| || ||||| |||||||||||||||||||| |||| ||| || || || ||  | ||| ||
tgtgatgaggggttagattcacactttgcaaagtccccctttcatgcatactgttggttgagactttcctataattgcttgact-tatttaatatccgcagTTGGAGAAAAGTGCAGCACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAG

upper sequence: PP1S21_270V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: AT4G37930.1 (Arabidopsis thaliana), 3'ss of exon 7
gcgcagtttcgttgcagttgattttcccgaagattatgaaaac-taggagtttttttctgacagattctctaacttttttca---tcatattctttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG
             |   || | | | |     |||| | || | ||| |  || |  || ||    |   ||||  |    |      || | ||  |   ||||||||||| || || || || ||||| ||||| ||||| || |||||||| |||||||||||  |    || ||||| || |||||  |  ||
-------------gttcttaactcttct----attaagcaatcatagtaacttataactaacccgcttcataacaatacataagtctttaattttgatttgcagATGGAGAAAAGTGCTACTCTTTTCAGGCCAAAATTGATTGTTGCTGGTGCAAGTGCTTATGCTAGATTGTATGACTATGCCCGCATCAGAAAG

upper sequence: PP1S21_270V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 7
gcgcagtttcgttgcagttgattttcccga--agattatgaaaactaggagtttttttctgacagattctctaacttttttca---tcatattctttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG
       | || |  |||||    |   ||  ||||        |||   |||| |   |    | |  |  ||  || |      | |||     |     ||| |||| || || || |||||||||||||||||  | ||||| ||||||||||||||||||||||| |  || || || || || || ||| ||
-----tctgcgattgagttgtccatttagataagatgtgtctgtctattcgtttatgcatatttgttagtagaagcttgtgtgacttaataactactaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAG

upper sequence: PP1S21_270V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: Vv00s0211g00070.t01 (Vitis vinifera), 3'ss of exon 7
gcgcagtttcgttgcagttgattttcccga--agattatgaaaactaggagtttttttctgacagattctctaacttttttca---tcatattctttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG
       | || |  |||||    |   ||  ||||        |||   |||| |   |    | |  |  ||  || |      | |||     |     ||| |||| || || || |||||||||||||||||  | ||||| ||||||||||||||||||||||| |  || || || || |  || ||| ||
-----tctgcgattaagttgtccatttagataagatgtgtctgtctattcgtttatgcatatttgttagtagaagcttgtgtgacttaatagctactaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACATATTCGCAAG

upper sequence: PP1S21_270V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: Vv00s0211g00100.t01 (Vitis vinifera), 3'ss of exon 7
gcgcagtttcgttgcagttgattttcccga--agattatgaaaactaggagtttttttctgacagattctctaactttttt---catcatattctttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG
       | || |  |||||    |   ||  ||||        |||   |||| |   |    | |  |  ||  || |    | | |||     |     ||| |||| || || || |||||||||||||||||  | ||||| ||||||||||||||||||||||                             
-----tctgcgattaagttgtccatttagataagatgtgtctgtctattcgtttatgcatatttgttagtagaagcttgtgtgacttaatagctactaattgcagTTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCC-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162223942|gb|FC398948.1|FC398948
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162170713|gb|FC346300.1|FC346300
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162196160|gb|FC374320.1|FC374320
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162163180|gb|FC340234.1|FC340234
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162177205|gb|FC352634.1|FC352634
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162168761|gb|FC344751.1|FC344751
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162181782|gb|FC357381.1|FC357381
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCNNAAGT-GATAGTCGCTGGTGC
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCA-AAGTTGATAGTCGCTGGTGC
EST: gi|162170818|gb|FC347432.1|FC347432
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162230450|gb|FC407391.1|FC407391
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162179862|gb|FC355933.1|FC355933
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162204585|gb|FC381969.1|FC381969
EST:     CGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|22492390|gb|BU052313.1|BU052313
EST:     CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162222160|gb|FC397388.1|FC397388
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162241441|gb|FC418580.1|FC418580
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTC
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTC
EST: gi|162200866|gb|FC377061.1|FC377061
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGAC-AAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162273886|gb|FC450025.1|FC450025
EST:     CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162157150|gb|FC333720.1|FC333720
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162158553|gb|FC334556.1|FC334556
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162180035|gb|FC356106.1|FC356106
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162265170|gb|FC441257.1|FC441257
EST:     CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162184252|gb|FC360493.1|FC360493
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162199804|gb|FC376397.1|FC376397
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162176992|gb|FC353669.1|FC353669
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|208363337|gb|DC943559.1|DC943559
EST:     CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|100447569|gb|CJ971868.1|CJ971868
EST:     CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTAGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162157748|gb|FC335462.1|FC335462
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162199622|gb|FC373274.1|FC373274
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162161888|gb|FC337964.1|FC337964
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162166993|gb|FC342455.1|FC342455
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162199573|gb|FC373225.1|FC373225
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|100401727|gb|BY954677.1|BY954677
EST:     CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGA
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGA
EST: gi|162179299|gb|FC356248.1|FC356248
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162185211|gb|FC361721.1|FC361721
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162229758|gb|FC404029.1|FC404029
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTG
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTG
EST: gi|162164433|gb|FC341052.1|FC341052
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162188408|gb|FC364278.1|FC364278
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162206365|gb|FC382643.1|FC382643
EST:     CGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162219994|gb|FC395366.1|FC395366
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|100356141|gb|BY946217.1|BY946217
EST:     CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGAACAAAGTTGATAATCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162167058|gb|FC342520.1|FC342520
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|100411150|gb|BY956345.1|BY956345
EST:     CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162198596|gb|FC374768.1|FC374768
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162153713|gb|FC329116.1|FC329116
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|67569716|gb|BJ942540.1|BJ942540
EST:     CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162196885|gb|FC375162.1|FC375162
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|100382988|gb|BY986984.1|BY986984
EST:     CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162178979|gb|FC354287.1|FC354287
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162182206|gb|FC358221.1|FC358221
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|100401795|gb|BY954712.1|BY954712
EST:     CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAAGACAAAAGTGGATAGTCGCTGGTGC
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCA-GACCAAAGTTGATAGTCGCTGGTGC
EST: gi|162211794|gb|FC387458.1|FC387458
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162191214|gb|FC367892.1|FC367892
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162164431|gb|FC341050.1|FC341050
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162265229|gb|FC441316.1|FC441316
EST:     CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162154208|gb|FC330339.1|FC330339
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|100390306|gb|BY952714.1|BY952714
EST:     CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGNCA-CACTCTTCAGACCAA-GTTGATAGTCGCTGGTGC
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCG-CAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGC
EST: gi|162178246|gb|FC354652.1|FC354652
EST:     CGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162180258|gb|FC355263.1|FC355263
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162234140|gb|FC410354.1|FC410354
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162184985|gb|FC362431.1|FC362431
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|100390305|gb|BY952713.1|BY952713
EST:     CTATGCCCTACAGACCGAACGAGTCCACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162183896|gb|FC360202.1|FC360202
EST:     CGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162225773|gb|FC400713.1|FC400713
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|161978982|gb|EE296273.1|EE296273
EST:     CCCTACAGANTGAACGAGTCCACAGGTNATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTCGATAGTCGCTGGTGCT
genomic: CCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162276986|gb|FC453084.1|FC453084
EST:     CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162240980|gb|FC416611.1|FC416611
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAG
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAG
EST: gi|100446449|gb|CJ970748.1|CJ970748
EST:     CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAG                         ATGGAGAAAA-CGCANCACTCTTCA
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCA
EST: gi|162243208|gb|FC415560.1|FC415560
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162151096|gb|FC327121.1|FC327121
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162195879|gb|FC375612.1|FC375612
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|161970270|gb|EE296251.1|EE296251
EST:     CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGTACCAAAGTTGATAGTCGCTGGTGC
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAG-ACCAAAGTTGATAGTCGCTGGTGC
EST: gi|162162498|gb|FC339216.1|FC339216
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162195138|gb|FC368813.1|FC368813
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162192085|gb|FC367298.1|FC367298
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162170542|gb|FC347675.1|FC347675
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162231324|gb|FC407059.1|FC407059
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162178476|gb|FC354200.1|FC354200
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
EST: gi|162166332|gb|FC342925.1|FC342925
EST:     CTATGCCCTACAGACTGAACGAGTCTACAGGTTATATCGACTATGATCAG                         ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT
genomic: CTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 114

ACTGATACAAAGAAGATTTCAGCCGTTTCCATTTTCTTCGAGACTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattg ... ttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggagtttttttctgacagattctctaacttttttcatcatattctttttccccagATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG
                     ctctaac  putative branch site (score: 114)
                   ttctctaacttttttc  CT-rich tract
                            ttttttcatcatattc  TA-rich tract