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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctgattctacagatgtttgaacatgacaacttcatgctcccttatctaattcttgtgcggatggatttgcttcattgcgtgtgttaacggggattattccgtgcttttgttgaagGTCCTCGCCTCTCTTTCTAAGTGCATCGAAACTTTGAAAA

Basic information

species Physcomitrella patens
transcript PP1S218_19V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162164429|gb|FC341048.1|FC341048
EST:     ACCACGCAGAAGTGTCCATCGCCTTCATTCACAATACGAAGCTTGATTTG                         GTCCTCGCCTCTCTTTCTAAGTGCATCGAAACTTTGAAAA
genomic: ACCACGCAGAAGTGTCCATCGCCTTCATTCACAATACGAAGCTTGATTTGgtatgtctga ... tttgttgaagGTCCTCGCCTCTCTTTCTAAGTGCATCGAAACTTTGAAAA
EST: gi|162167702|gb|FC344016.1|FC344016
EST:     ACCACGCAGAAGTGTCCATCGCCTTCATTCACAATACGAAGCTTGATTTG                         GTCCTCGCCTCTCTTTCTAAGTGCATCGAAACTTTGAAAA
genomic: ACCACGCAGAAGTGTCCATCGCCTTCATTCACAATACGAAGCTTGATTTGgtatgtctga ... tttgttgaagGTCCTCGCCTCTCTTTCTAAGTGCATCGAAACTTTGAAAA
EST: gi|162171311|gb|FC347236.1|FC347236
EST:     ACCACGCAGAAGTGTCCATCGCCTTCATTCACAATACGAAGCTTGATTTG                         GTCCTCGCCTCTCTTTCTAAGTGCATCGAAACTTTGAAAA
genomic: ACCACGCAGAAGTGTCCATCGCCTTCATTCACAATACGAAGCTTGATTTGgtatgtctga ... tttgttgaagGTCCTCGCCTCTCTTTCTAAGTGCATCGAAACTTTGAAAA
EST: gi|162235485|gb|FC411308.1|FC411308
EST:     ACCACGCAGAAGTGTCCATCGCCTTCATTCACAATACGAAGCTTGATTTG                         GTCCTCGCCTCTCTTTCTAAGTGCATCGAAACTTTGAAAA
genomic: ACCACGCAGAAGTGTCCATCGCCTTCATTCACAATACGAAGCTTGATTTGgtatgtctga ... tttgttgaagGTCCTCGCCTCTCTTTCTAAGTGCATCGAAACTTTGAAAA
EST: gi|162199213|gb|FC375049.1|FC375049
EST:     ACCACGCAGAAGTGTCCATCGCCTTCATTCACAATACGAAGCTTGATTTG                         GTCCTCGCCTCTCTTTCTAAGTGCATCGAAACTTTGAAAA
genomic: ACCACGCAGAAGTGTCCATCGCCTTCATTCACAATACGAAGCTTGATTTGgtatgtctga ... tttgttgaagGTCCTCGCCTCTCTTTCTAAGTGCATCGAAACTTTGAAAA
EST: gi|162167280|gb|FC342845.1|FC342845
EST:     ACCACGCAGAAGTGTCCATCGCCTTCATTCACAATACGAAGCTTGATTTG                         GTCCTCGCCTCTCTTTCTAAGTGCATCGAAACTTTGAAAA
genomic: ACCACGCAGAAGTGTCCATCGCCTTCATTCACAATACGAAGCTTGATTTGgtatgtctga ... tttgttgaagGTCCTCGCCTCTCTTTCTAAGTGCATCGAAACTTTGAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggatttgcttcattgcgtgtgttaacggggattattccgtgcttttgttgaagGTCCTCGCCTCTCTTTCTAAGTGCATCGAAACTTTGAAAA
                     tgttaac  putative branch site (score: 2)
                                           cttttgtt  putative PPT
                                attatt  TA-rich tract