Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acagtgtatctctgtttaggcagattacagttgagctcaattaattgttgcgcgtacccgtattgtttactttctaatatatccacactgtgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCGCTCCTTACAGGCCTTGAAGAAGCGCACTAAAGATTCCTGTTATTTTCAC

Basic information

species Physcomitrella patens
transcript PP1S201_89V6.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S201_89V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GLYMA08G02850.2 (Glycine max), 3'ss of exon 7
acagtgtatctctgtttaggcagattacagttgagctcaattaattgttgcgcgtacccgtattgtttactttctaatatatccacactgtgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCGCTCCTTACAGGCCTTGAAGAAGCGCACTAAAGATTCCTGTTATTTTCAC
            | | ||       | || ||||    |  ||||  | |     |  | |  | | |  | | || | ||            | ||||| ||| || ||||||||||| |||||||||||||||||    ||||| || || || | |||||| | |  | |      |   | ||    |||||    
-----------gtatgtattttctcttcaattgaatagaggtaatcat-gtaaa-attcatcgtttctgatctttagtgtactt---------tttgcagGTATATCCAACTCATTTGGATTCGGTGGACACAATTCAGTAGTTGTCTTTGCCCCATTCAGGCCATAAGTAGGATTCAAACTCAATCTGAGTATTTCTTT

upper sequence: PP1S201_89V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GLYMA05G36690.1 (Glycine max), 3'ss of exon 7
acagtgtatctctgtttaggcagattacagttgagctcaattaattgttgcgcgtacccgtattgtttactttctaatatatccacactgtgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCGCTCCTTACAGGCCTTGAAGAAG---CGCACTAAAGATTCCTGTTATTTTCAC
            | | ||       | || | ||    |  ||||  | |     |  | |  | | |  | | || | ||  | |         ||||| ||| || ||||||||||| |||||||||||||||||    ||||| || || || | |||||| | |  |     |  ||| ||  |   | ||  |||   
-----------gtatgtattatctcttcaatcgaatagaggtaataat-gtaaa-attcatcgtttctgatctttagtgtaatccc---------tgcagGTATATCCAACTCATTTGGATTCGGTGGACACAATTCAGTAGTTGTCTTTGCCCCATTCAGGCCATAAGTAGAATTCAAACTCAACCTGAGTATTTCTTT---

upper sequence: PP1S201_89V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: EFJ32129 (Selaginella moellendorffii), 3'ss of exon 6
acagtgtatctctgtttaggcagattacagttgagctcaattaattgttgcgcgtacccgtattgtttactttctaatatatccacactgtgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCGCTCCTTACAGGCCTTGAAGAAGCGCACTAAAGATTCCTGTTATTTTCAC
                             ||    | |||||    ||| | |   | || |  | |    | ||   |  | || | | ||   ||||||||| || ||||| ||||| ||||||||||||||||||  |||||| |||||||| | || |||||||                                
-----------------------------gtgagtcgcaatttgc-gtttctctctctcgaa--gctagtgtgct--cacgttcaaattttg---tgcagCTATTTCGAACTCGTTTGGATTCGGTGGACACAATTCCGTCGTTGTCTTCGCTCCATTCAAGCCTTGA--------------------------------

upper sequence: PP1S201_89V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: EFJ37714 (Selaginella moellendorffii), 3'ss of exon 6
acagtgtatctctgtttaggcagattacagttgagctcaattaattgttgcgcgtacccgtattgtttactttctaatatatccacactgtgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCGCTCCTTACAGGCCTTGAAGAAGCGCACTAAAGATTCCTGTTATTTTCAC
                             ||    | |||||  | |||   |   | |     | |    | ||   |    || | | ||   ||||||||| || ||||| ||||| ||||||||||||||||||   ||||| |||||||| | || |||||||                                
-----------------------------gtaagtcgcaatttgt-gtttttctctctctcgaagctagtgtgct--cacgctcaaattttg---tgcagCTATTTCGAACTCGTTTGGATTCGGTGGACACAATTCCGTTGTTGTCTTCGCTCCATTCAAGCCTTGA--------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162194223|gb|FC371048.1|FC371048
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162193225|gb|FC372013.1|FC372013
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|67692896|gb|BJ953129.1|BJ953129
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|208380712|gb|DC919428.1|DC919428
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162226177|gb|FC401637.1|FC401637
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162277902|gb|FC453825.1|FC453825
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162186064|gb|FC361268.1|FC361268
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162221094|gb|FC397735.1|FC397735
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162182566|gb|FC357541.1|FC357541
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162160823|gb|FC336722.1|FC336722
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162192157|gb|FC368306.1|FC368306
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|37825167|gb|BJ583233.1|BJ583233
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162220365|gb|FC395733.1|FC395733
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162185812|gb|FC362368.1|FC362368
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162216433|gb|FC393266.1|FC393266
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162194224|gb|FC371049.1|FC371049
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|208370717|gb|DC948254.1|DC948254
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|67720443|gb|BJ970702.1|BJ970702
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162252117|gb|FC428356.1|FC428356
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|208373189|gb|DC945143.1|DC945143
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162239762|gb|FC417161.1|FC417161
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162184291|gb|FC359700.1|FC359700
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|208362900|gb|DC957911.1|DC957911
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGNGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|37835911|gb|BJ593923.1|BJ593923
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|67724232|gb|BJ974491.1|BJ974491
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162185811|gb|FC362367.1|FC362367
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162221824|gb|FC398391.1|FC398391
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162270068|gb|FC446768.1|FC446768
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162192156|gb|FC368305.1|FC368305
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162155171|gb|FC331160.1|FC331160
EST:     ATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: ATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|208363288|gb|DC954418.1|DC954418
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162246160|gb|FC423596.1|FC423596
EST:     TCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: TCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|67722717|gb|BJ972976.1|BJ972976
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162160984|gb|FC337008.1|FC337008
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162160945|gb|FC337489.1|FC337489
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162267460|gb|FC444211.1|FC444211
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162277397|gb|FC453203.1|FC453203
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162163020|gb|FC338410.1|FC338410
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162190912|gb|FC368110.1|FC368110
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162162751|gb|FC337805.1|FC337805
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162190722|gb|FC367608.1|FC367608
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162246159|gb|FC423595.1|FC423595
EST:     TCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: TCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|67721715|gb|BJ971974.1|BJ971974
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162182298|gb|FC357169.1|FC357169
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATTTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162216432|gb|FC393265.1|FC393265
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162155215|gb|FC331698.1|FC331698
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162192702|gb|FC370099.1|FC370099
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
EST: gi|162190913|gb|FC368111.1|FC368111
EST:     GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG                         CTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG
genomic: GACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTGgtgagtctta ... tgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgcgcgtacccgtattgtttactttctaatatatccacactgtgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCGCTCCTTACAGGCCTTGAAGAAGCGCACTAAAGATTCCTGTTATTTTCAC
                          ttctaat  putative branch site (score: 2)
               tattgtttactttcta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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acagtgtatctctgtttaggcagattacagttgagctcaattaattgttgcgcgtacccgtattgtttactttctaatatatccacactgtgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCGCTCCTTACAGGCCTTGAAGAAGCGCACTAAAGATTCCTGTTATTTTCAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC