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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acacttggtttttgatgatttgttcttgtaaagtccagttggcttatgaccttccatcatttgcaactgttaatctgatcgtttctatttgcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACTGGGACGGGCCCACAACGAAGTATGTGGAGAACGCCAAGTTTCCCAAGG

Basic information

species Physcomitrella patens
transcript PP1S1_300V6.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S1_300V6.2 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GLYMA10G36990.2 (Glycine max), 3'ss of exon 7
acacttggtttttgatgatttgttcttgtaaagtccagttggcttatgaccttccatcatttg---caactgttaatctgatcgtttctatttgcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACTGGGACGGGCCCACAACGAAGTATGTGGAGAACGCCAAGTTTCCCAAGG
 |||   |||   |  | |  |  |  | |   ||   |||        |  |   | |||||    |  | |||||    |  | | |  ||      ||||||||| || || |||||||| || || ||||||||||||||||| ||| ||||||| |  || || || ||                             
-cacagagttcacgg-gttaagggcacgcatgatcttattgaaac-catctgtagcttatttgagtgatatattaattgcttgatctgtggttcacctttcagATTCCAAAGAAAGGCAAGATCTATTCAGTGAATGAAGGAAATGCTAAAAACTGGGATGACCCTACTACCAA-----------------------------

upper sequence: PP1S1_300V6.2 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GLYMA16G28310.1 (Glycine max), 3'ss of exon 8
acacttggtttttgatgatttgttcttgtaaagtccagttggcttatgacct---tccatcatttg---caactgttaatctgatcgtttctatttgcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACTGGGACGGGCCCACAACGAAGTATGTGGAGAACGCCAAGTTTCCCAAGG
        ||  |   || |      | ||||  |  ||      | | | |   |   | | |||    |  || |||||   |  | | |  ||   |   ||||| || || || || || ||||| || ||||||||||||||||||||| |||||||  | || ||  | |                              
------aattcatatagactatagagtataaacacacgtatatccacgccatcagtgggttacttgaggtatatggtaatcatttgatgtatgattctctgtgcagATCCCAAAGAAAGGTAAAATTTATTCAGTGAATGAAGGAAATGCCAAAAACTGGGATCGTCCTACTGCTAC-----------------------------

upper sequence: PP1S1_300V6.2 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GLYMA08G19430.1 (Glycine max), 3'ss of exon 8
----acacttggtttttgatg-atttgttcttgtaaagtccagttggcttatgaccttccatcatttgcaactgttaatctgatcgtttctatttgcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACTGGGACGGGCCCACAACGAAGTATGTGGAGAACGCCAAGTTTCCCAAGG
     ||  |  |||||  ||  |  || |  ||       |||| |  ||| |    | | | ||   |  |||| |  |  |   |  || |||| |    |||| || |  || || |||||||| || ||||||||||||||||||| | ||||||| |  || || || ||                             
cattgcatataattttttttgtgtgcgtgccagtgtttcaaagttagactattaaag-cgagctttcaaatttgtttaattactatgtgttacttgcat----agATACCAAGTAAAGGAAAGATTTATTCGGTGAATGAAGGAAATGCCAGAAACTGGGATGAACCAACCACTAA-----------------------------

upper sequence: PP1S1_300V6.2 (Physcomitrella patens), 3'ss of exon 7
lower sequence: EFJ23220 (Selaginella moellendorffii), 3'ss of exon 7
acacttggtttttgatgatttgttcttgtaaagtccagttggcttatgaccttc-catcatttgcaactgttaatctgatcgtttctatttgcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACTGGGACGGGCCCACAACGAAGTATGTGGAGAACGCCAAGTTTCCCAAGG
                                         |    |||  ||   ||  ||||||  ||||||  | ||   || ||            | |||| |  ||||| |||||||| |||||||| ||||||||||| || |||||||| |  || ||||  || || |||||||  || |||||||| |  |
-----------------------------------------gtaagtgagttttatatgttttgcag-tgttaacttaatgtcttata------------gGTTCCAAGGAAGGGAAAGATTTATTCTGTGAACGAAGGAAATGCTAAGCACTGGGATGAACCAACAAAAAAATACGTGGAGATTGCAAAGTTTCCGACAG

upper sequence: PP1S1_300V6.2 (Physcomitrella patens), 3'ss of exon 7
lower sequence: EFJ25223 (Selaginella moellendorffii), 3'ss of exon 7
acacttggtttttgatgatttgttcttgtaaagtccagttggcttatgaccttc-catcatttgcaactgttaatctgatcgtttctatttgcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACTGGGACGGGCCCACAACGAAGTATGTGGAGAACGCCAAGTTTCCCAAGG
                                         |    |||  ||   ||  | ||||  ||||||  | ||   || ||            | |||| |  ||||| |||||||| |||||||| ||||||||||| || ||||||||||  || ||||  || || |||||||  || |||||||| | ||
-----------------------------------------gtacgtgagttttatatgttctgcag-tgttaacttaatgtcttata------------gGTTCCAAGGAAGGGAAAGATTTATTCTGTGAACGAAGGAAATGCTAAGCACTGGGACGAACCAACAAAAAAATACGTGGAGATTGCAAAGTTTCCGACGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100396704|gb|BY953785.1|BY953785
EST:     CTTGATCCCCTCC-TCGGAGAAATCATCTTGACGCACCCNTAATATCA-G                         ATTCCCAAAAAGGGCAAGATTTACTCTGTGA
genomic: CTTGATCCC-TCCCTCGGAGAATTCATCTTGACGCACCC-TAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGA
EST: gi|100372971|gb|BY949374.1|BY949374
EST:     CTTGATNCCCTCC-TCGNAGAATTCATCTTGACGCACCCTAAATATCA-G                         ATTCCCAAAAAAGGGCA-GATTTACTCTGTGAATGANGGGAAATGC-AAA
genomic: CTTGAT-CCCTCCCTCGGAGAATTCATCTTGACGCACCCTAA-TATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAA-GGGCAAGATTTACTCTGTGAATGAAGG-AAATGCCAAA
EST: gi|67694034|gb|BJ954267.1|BJ954267
EST:     CTAATATCAAG                         ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATNCCAAACAC
genomic: CTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: gi|162278601|gb|FC454999.1|FC454999
EST:     CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG                         ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: gi|208365212|gb|DC950739.1|DC950739
EST:     CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG                         ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: gi|162193915|gb|FC371728.1|FC371728
EST:     CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG                         ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: gi|162171403|gb|FC346678.1|FC346678
EST:     CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG                         ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: gi|208378504|gb|DC927201.1|DC927201
EST:     CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG                         ATTCCCAAAAAGGGCAAGATTTACTCTGCGAATGAAGGAAATGCCAAACAC
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: gi|208396143|gb|DC924609.1|DC924609
EST:     CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG                         ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: gi|100404176|gb|BY955293.1|BY955293
EST:     CTTTGATCC-TCCCCTCG-AGAAT-CATCTTGACGCACCCTAATATCAAG                         ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGA
genomic: CTT-GATCCCTCCC-TCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGA
EST: gi|208348185|gb|DC920976.1|DC920976
EST:     CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG                         ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: gi|208393616|gb|DC904332.1|DC904332
EST:     CCCTTGATCCCTCCCTCGGAGAATNCATCTTGACGCACCCTAATATCAAG                         ATTCC-AAAAAGGGCAAGATTTACTCTGTGAATGAAG-AAATGCCAA-CAC
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: gi|162152140|gb|FC328730.1|FC328730
EST:     CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG                         ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: gi|18333622|gb|BJ165637.1|BJ165637
EST:     CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG                         ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: gi|208373427|gb|DC931872.1|DC931872
EST:     CCCTTGATCCCTCCCTCGGAGANT-CATCTTGACGCACCCTAATATCAAG                         ATTCCCAAAA-GGGCAAGATTTACTCTGTGANTGAAGGAA
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAA
EST: gi|100391045|gb|BY953055.1|BY953055
EST:     CCCTTGATCCCTCCCTCGAAGATTTCATCTGGACGCACCCTAATATCAAG                         ATCCCCAAAAAGGGCAAG
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAG
EST: gi|208394809|gb|DC920152.1|DC920152
EST:     CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG                         ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: gi|208352123|gb|DC906268.1|DC906268
EST:     CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG                         ATTCCCAAAA-GGGCA-GATTTACTCTGT
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGT
EST: gi|100352928|gb|BY945520.1|BY945520
EST:     CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG                         ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: gi|208378151|gb|DC902624.1|DC902624
EST:     CCCTTGATCCCTCCCTCGGAGANT-CATCTTGACGCACCCTAATATCANG                         ATTCCCAAAANGG-CAANATTTACTCTGTGA
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGA
EST: gi|208352801|gb|DC917765.1|DC917765
EST:     CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG                         ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: gi|208385201|gb|DC923581.1|DC923581
EST:     CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG                         ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: gi|208352520|gb|DC918229.1|DC918229
EST:     CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG                         ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: gi|162171402|gb|FC346677.1|FC346677
EST:     CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG                         ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: gi|208398545|gb|DC916516.1|DC916516
EST:     CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG                         ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: gi|100445852|gb|CJ970151.1|CJ970151
EST:     CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG                         ATTCCCAAAA-GGGCAAGATTTACTCTGTGA-TGAAGNAA-TGCCAA-CAC
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: gi|100362014|gb|BY947740.1|BY947740
EST:     CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG                         ATTCCCNAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: gi|208358947|gb|DC946376.1|DC946376
EST:     CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG                         ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: gi|100353087|gb|BY945599.1|BY945599
EST:     CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG                         ATTCCCAAAA-GGGCAAGATTTACTCTGTGAATGAAGGAA-TGCCAAACAC
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: gi|18338549|gb|BJ170573.1|BJ170573
EST:     CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG                         ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: gi|162278600|gb|FC454998.1|FC454998
EST:     CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG                         ATTCCCAAAAAGGGCAAGATTTACTTTGTGAATGAAGGAAATGCCAAACAC
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: gi|162193916|gb|FC371729.1|FC371729
EST:     CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG                         ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: gi|208349119|gb|DC925902.1|DC925902
EST:     CCCTTGATCCCTCCCTCGGAGAATTCATCTCGACGCACCCTAATATCAAG                         ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 32 (downstream exon)
Score: 15

TTGGTACTGAGCACAGGTGCAGGGGTTAATGGATTCACCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACTGGGACGGGCCCACAACGAAGTATGTGGAGAACGCCAAGTTTCCCAAGG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaccttccatcatttgcaactgttaatctgatcgtttctatttgcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACTGGGACGGGCCCACAACGAAGTATGTGGAGAACGCCAAGTTTCCCAAGG
                                    tttctatttgcttc  CT-rich tract
                                    tttctattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acacttggtttttgatgatttgttcttgtaaagtccagttggcttatgaccttccatcatttgcaactgttaatctgatcgtttctatttgcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACTGGGACGGGCCCACAACGAAGTATGTGGAGAACGCCAAGTTTCCCAAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA