1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...acacttggtttttgatgatttgttcttgtaaagtccagttggcttatgaccttccatcatttgcaactgttaatctgatcgtttctatttgcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACTGGGACGGGCCCACAACGAAGTATGTGGAGAACGCCAAGTTTCCCAAGG
species | Physcomitrella patens |
transcript | PP1S1_300V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCCTTGATCCCTCCCTCGAAGATTTCATCTGGACGCACCCTAATATCAAG ATCCCCAAAAAGGGCAAGEST: gi|100404176|gb|BY955293.1|BY955293
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAG
EST: CTTTGATCC-TCCCCTCG-AGAAT-CATCTTGACGCACCCTAATATCAAG ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAEST: gi|67694034|gb|BJ954267.1|BJ954267
genomic: CTT-GATCCCTCCC-TCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGA
EST: CTAATATCAAG ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATNCCAAACACEST: gi|100396704|gb|BY953785.1|BY953785
genomic: CTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: CTTGATCCCCTCC-TCGGAGAAATCATCTTGACGCACCCNTAATATCA-G ATTCCCAAAAAGGGCAAGATTTACTCTGTGAEST: gi|100445852|gb|CJ970151.1|CJ970151
genomic: CTTGATCCC-TCCCTCGGAGAATTCATCTTGACGCACCC-TAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGA
EST: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG ATTCCCAAAA-GGGCAAGATTTACTCTGTGA-TGAAGNAA-TGCCAA-CACEST: gi|208373427|gb|DC931872.1|DC931872
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: CCCTTGATCCCTCCCTCGGAGANT-CATCTTGACGCACCCTAATATCAAG ATTCCCAAAA-GGGCAAGATTTACTCTGTGANTGAAGGAAEST: gi|208393616|gb|DC904332.1|DC904332
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAA
EST: CCCTTGATCCCTCCCTCGGAGAATNCATCTTGACGCACCCTAATATCAAG ATTCC-AAAAAGGGCAAGATTTACTCTGTGAATGAAG-AAATGCCAA-CACEST: gi|162278601|gb|FC454999.1|FC454999
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACEST: gi|100372971|gb|BY949374.1|BY949374
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: CTTGATNCCCTCC-TCGNAGAATTCATCTTGACGCACCCTAAATATCA-G ATTCCCAAAAAAGGGCA-GATTTACTCTGTGAATGANGGGAAATGC-AAAEST: gi|100352928|gb|BY945520.1|BY945520
genomic: CTTGAT-CCCTCCCTCGGAGAATTCATCTTGACGCACCCTAA-TATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAA-GGGCAAGATTTACTCTGTGAATGAAGG-AAATGCCAAA
EST: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACEST: gi|208365212|gb|DC950739.1|DC950739
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACEST: gi|208352123|gb|DC906268.1|DC906268
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG ATTCCCAAAA-GGGCA-GATTTACTCTGTEST: gi|162193915|gb|FC371728.1|FC371728
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGT
EST: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACEST: gi|162171403|gb|FC346678.1|FC346678
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACEST: gi|208378504|gb|DC927201.1|DC927201
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG ATTCCCAAAAAGGGCAAGATTTACTCTGCGAATGAAGGAAATGCCAAACACEST: gi|208396143|gb|DC924609.1|DC924609
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACEST: gi|208348185|gb|DC920976.1|DC920976
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACEST: gi|162152140|gb|FC328730.1|FC328730
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACEST: gi|100353087|gb|BY945599.1|BY945599
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG ATTCCCAAAA-GGGCAAGATTTACTCTGTGAATGAAGGAA-TGCCAAACACEST: gi|18333622|gb|BJ165637.1|BJ165637
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACEST: gi|208394809|gb|DC920152.1|DC920152
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACEST: gi|208352801|gb|DC917765.1|DC917765
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACEST: gi|208385201|gb|DC923581.1|DC923581
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACEST: gi|208352520|gb|DC918229.1|DC918229
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACEST: gi|162171402|gb|FC346677.1|FC346677
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACEST: gi|208398545|gb|DC916516.1|DC916516
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACEST: gi|208358947|gb|DC946376.1|DC946376
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACEST: gi|18338549|gb|BJ170573.1|BJ170573
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACEST: gi|208378151|gb|DC902624.1|DC902624
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: CCCTTGATCCCTCCCTCGGAGANT-CATCTTGACGCACCCTAATATCANG ATTCCCAAAANGG-CAANATTTACTCTGTGAEST: gi|162278600|gb|FC454998.1|FC454998
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGA
EST: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG ATTCCCAAAAAGGGCAAGATTTACTTTGTGAATGAAGGAAATGCCAAACACEST: gi|162193916|gb|FC371729.1|FC371729
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAG ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACEST: gi|208349119|gb|DC925902.1|DC925902
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
EST: CCCTTGATCCCTCCCTCGGAGAATTCATCTCGACGCACCCTAATATCAAG ATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
genomic: CCCTTGATCCCTCCCTCGGAGAATTCATCTTGACGCACCCTAATATCAAGgtaattttaa ... gcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACAC
atgaccttccatcatttgcaactgttaatctgatcgtttctatttgcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACTGGGACGGGCCCACAACGAAGTATGTGGAGAACGCCAAGTTTCCCAAGG
tttctatttgcttc CT-rich tract
tttctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acacttggtttttgatgatttgttcttgtaaagtccagttggcttatgaccttccatcatttgcaactgttaatctgatcgtttctatttgcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACTGGGACGGGCCCACAACGAAGTATGTGGAGAACGCCAAGTTTCCCAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA