1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagctccatcaccgctttcgatgtaagtgattatgtttttgagcgatcccatttaaaactgtataactggatttctagccgctaaaccctccactgtttttacagGAGAGAGAAGATCACGCTAAACCCAGTCACTTGGCGATTGTGTGAAATGAAACAAAATGACGGATCGGCTCCATTAAAGTTGGGCTATATTCGGCTCTCC
species | Physcomitrella patens |
transcript | PP1S199_127V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGACGCTACTAAAGAAAGATGCTACAACACCAAGTACTATTACGGTCTT GAGAGAGAAGATCACGCTAAACCCAGTCACTTGGCGATTGTGTGAAATGAAEST: gi|162192956|gb|FC371458.1|FC371458
genomic: CTGACGCTACTAAAGAAAGATGCTACAACACCAAGTACTATTACGGTCTTgtaagctcca ... gtttttacagGAGAGAGAAGATCACGCTAAACCCAGTCACTTGGCGATTGTGTGAAATGAA
EST: CTGACGCTACTAAAGAAAGATGCTACAACACCAAGTACTATTACGGTCTT GAGAGAGAAGATCACGCTAAACCCAGTCACTTGGCGATTGTGTGAAATGAA
genomic: CTGACGCTACTAAAGAAAGATGCTACAACACCAAGTACTATTACGGTCTTgtaagctcca ... gtttttacagGAGAGAGAAGATCACGCTAAACCCAGTCACTTGGCGATTGTGTGAAATGAA
atttaaaactgtataactggatttctagccgctaaaccctccactgtttttacagGAGAGAGAAGATCACGCTAAACCCAGTCACTTGGCGATTGTGTGAAATGAAACAAAATGACGGATCGGCTCCATTAAAGTTGGGCTATATTCGGCTCTCC
cgctaaa putative branch site (score: 3)
ccctccactgttttt CT-rich tract
tgttttta TA-rich tract