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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttttgttttgttattttgttattatgacatttatacgaaatttatatctgtttctatttttagacaaacctgagacatgtctattttgatctcttaccacatttatgtgatcgactgtggttattacttttttcctgtacttacttaaagtactggatgtaattcagGGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAAACCATGCCCCTCAAACGTGATTAGGCCTGATACACGTTCGAAAGTTGTG

Basic information

species Physcomitrella patens
transcript PP1S197_22V6.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208364450|gb|DC954525.1|DC954525
EST:     ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACG                         GGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
genomic: ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACGgtaatttttg ... tgtaattcagGGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
EST: gi|18341261|gb|BJ173295.1|BJ173295
EST:     ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACG                         GGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
genomic: ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACGgtaatttttg ... tgtaattcagGGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
EST: gi|37852978|gb|BJ610986.1|BJ610986
EST:     ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACG                         GGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
genomic: ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACGgtaatttttg ... tgtaattcagGGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
EST: gi|208377412|gb|DC927072.1|DC927072
EST:     ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACG                         GGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
genomic: ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACGgtaatttttg ... tgtaattcagGGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
EST: gi|37837799|gb|BJ595807.1|BJ595807
EST:     ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACG                         GGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
genomic: ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACGgtaatttttg ... tgtaattcagGGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
EST: gi|208368331|gb|DC955528.1|DC955528
EST:     ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACG                         GGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
genomic: ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACGgtaatttttg ... tgtaattcagGGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
EST: gi|162168952|gb|FC345634.1|FC345634
EST:     ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACG                         GGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
genomic: ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACGgtaatttttg ... tgtaattcagGGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
EST: gi|208379303|gb|DC927286.1|DC927286
EST:     ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACG                         GGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
genomic: ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACGgtaatttttg ... tgtaattcagGGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
EST: gi|208368886|gb|DC947444.1|DC947444
EST:     ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACG                         GGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
genomic: ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACGgtaatttttg ... tgtaattcagGGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
EST: gi|208371088|gb|DC955936.1|DC955936
EST:     ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAACGTGATATTTATACG                         GGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
genomic: ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACGgtaatttttg ... tgtaattcagGGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
EST: gi|37833061|gb|BJ591073.1|BJ591073
EST:     ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACG                         GGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
genomic: ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACGgtaatttttg ... tgtaattcagGGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
EST: gi|67725639|gb|BJ975898.1|BJ975898
EST:     ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACG                         GGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
genomic: ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACGgtaatttttg ... tgtaattcagGGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
EST: gi|208365808|gb|DC955439.1|DC955439
EST:     ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACG                         GGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
genomic: ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACGgtaatttttg ... tgtaattcagGGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
EST: gi|37840277|gb|BJ598285.1|BJ598285
EST:     ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACG                         GGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
genomic: ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACGgtaatttttg ... tgtaattcagGGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
EST: gi|162266012|gb|FC442697.1|FC442697
EST:     ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACG                         GGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
genomic: ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACGgtaatttttg ... tgtaattcagGGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
EST: gi|208373759|gb|DC952722.1|DC952722
EST:     ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACG                         GGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
genomic: ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACGgtaatttttg ... tgtaattcagGGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
EST: gi|208367768|gb|DC944014.1|DC944014
EST:     ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACG                         GGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
genomic: ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACGgtaatttttg ... tgtaattcagGGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
EST: gi|208374709|gb|DC948667.1|DC948667
EST:     ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACG                         GGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGGA
genomic: ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACGgtaatttttg ... tgtaattcagGGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
EST: gi|162209736|gb|FC385670.1|FC385670
EST:     ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACG                         GGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
genomic: ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACGgtaatttttg ... tgtaattcagGGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
EST: gi|208371358|gb|DC952119.1|DC952119
EST:     ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACG                         GGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
genomic: ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACGgtaatttttg ... tgtaattcagGGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
EST: gi|162186318|gb|FC361626.1|FC361626
EST:     ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACG                         GGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
genomic: ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACGgtaatttttg ... tgtaattcagGGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
EST: gi|67721891|gb|BJ972150.1|BJ972150
EST:     ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACG                         GGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA
genomic: ATCTCATCAAGGATACTTTTGCCTCGGCTGCTGAGCGTGATATTTATACGgtaatttttg ... tgtaattcagGGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gactgtggttattacttttttcctgtacttacttaaagtactggatgtaattcagGGTGACGGTGTAGAGATTGTGATCATTAACAAGGACGGGATTAGAAGAGAAACCATGCCCCTCAAACGTGATTAGGCCTGATACACGTTCGAAAGTTGTG
                         tacttac  putative branch site (score: 1)
        ttattactttttt  TA-rich tract