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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccactacttctttagaaaaatactttctttgtcgctttttctttattctgggaataacaaagataggaagttactattggaagttgtcagatgagactgagttttcaacagatttctgacttctcttttggtttgttgttggctccttcagGTCAGTGCATTCCCTATCAGTGTGATGTTTGGAATGTGCGCAATATTTCTGGCACTGGCTGGTGTCTTGCAGCGCCGGCTCTTGATGGTTTCTGACAAGC

Basic information

species Physcomitrella patens
transcript PP1S18_8V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162188273|gb|FC364767.1|FC364767
EST:     ATTTTTTCCGGATTCCTTTGAACGTATTTGTGTGTGTTGTACTGTACAAT                         GTCAGTGCATTCCCTATCAGTGTGATGTTTGGAATGTGCGCAATATTTCTG
genomic: ATTTTTTCCGGATTCCTTTGAACGTATTTGTGTGTGTTGTACTGTACAATgtaagccact ... gctccttcagGTCAGTGCATTCCCTATCAGTGTGATGTTTGGAATGTGCGCAATATTTCTG
EST: gi|208372439|gb|DC952283.1|DC952283
EST:     ATTTTTTCCGGATTCCTTTGAACGTATTTGTGTGTGTTGTACTGTACAAT                         GTCAGTGCATTCCCTATCAGTGTGATGTTTGGAATGTGCGCAATATTTCTG
genomic: ATTTTTTCCGGATTCCTTTGAACGTATTTGTGTGTGTTGTACTGTACAATgtaagccact ... gctccttcagGTCAGTGCATTCCCTATCAGTGTGATGTTTGGAATGTGCGCAATATTTCTG
EST: gi|67694445|gb|BJ954678.1|BJ954678
EST:     ATTTTTTCCGGATTCCTTTGAACGTATTTGNGTGTGTTGTACTGTACAAT                         GTCAGTGCATTCCCTATCAGTGTGATGTTNGGAATGTGCGCAATATTTCTG
genomic: ATTTTTTCCGGATTCCTTTGAACGTATTTGTGTGTGTTGTACTGTACAATgtaagccact ... gctccttcagGTCAGTGCATTCCCTATCAGTGTGATGTTTGGAATGTGCGCAATATTTCTG
EST: gi|162268231|gb|FC444520.1|FC444520
EST:     ATTTTTTCCGGATTCCTTTGAACGTATTTGTGTGTGTTGTACTGTACAAT                         GTCAGTGCATTCCCTATCAGTGTGATGTTTGGAATGTGCGCAATATTTCTG
genomic: ATTTTTTCCGGATTCCTTTGAACGTATTTGTGTGTGTTGTACTGTACAATgtaagccact ... gctccttcagGTCAGTGCATTCCCTATCAGTGTGATGTTTGGAATGTGCGCAATATTTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgagttttcaacagatttctgacttctcttttggtttgttgttggctccttcagGTCAGTGCATTCCCTATCAGTGTGATGTTTGGAATGTGCGCAATATTTCTGGCACTGGCTGGTGTCTTGCAGCGCCGGCTCTTGATGGTTTCTGACAAGC
                 ttctgac  putative branch site (score: 2)
                                              ctccttc  putative PPT
     ttttcaa  TA-rich tract