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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acttaagagcataaatttatctatctgaattgttcaagactccttattctgactcctctttttgtctttttcgttttctttttgaaataaaataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAAGGTTTGCTG

Basic information

species Physcomitrella patens
transcript PP1S17_59V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162268500|gb|FC444373.1|FC444373
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|208377588|gb|DC922691.1|DC922691
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|67728207|gb|BJ978466.1|BJ978466
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|208394494|gb|DC953533.1|DC953533
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|162171168|gb|FC347782.1|FC347782
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|18339727|gb|BJ171754.1|BJ171754
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|18339387|gb|BJ171414.1|BJ171414
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|37845880|gb|BJ603888.1|BJ603888
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCNAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|18335316|gb|BJ167334.1|BJ167334
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGGTTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|162164731|gb|FC340778.1|FC340778
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|162263267|gb|FC438555.1|FC438555
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|37847445|gb|BJ605453.1|BJ605453
EST:     GAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|37823802|gb|BJ581868.1|BJ581868
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|67727983|gb|BJ978242.1|BJ978242
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|208344999|gb|DC925409.1|DC925409
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|162263268|gb|FC438556.1|FC438556
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAG
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAG
EST: gi|18340053|gb|BJ172081.1|BJ172081
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|208399703|gb|DC924901.1|DC924901
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|37822310|gb|BJ580376.1|BJ580376
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCGGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|37849938|gb|BJ607946.1|BJ607946
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|162216431|gb|FC393264.1|FC393264
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|18335899|gb|BJ167920.1|BJ167920
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|162150188|gb|FC326065.1|FC326065
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|67720467|gb|BJ970726.1|BJ970726
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|18335231|gb|BJ167249.1|BJ167249
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTANCGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGNAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|67723616|gb|BJ973875.1|BJ973875
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|162216430|gb|FC393263.1|FC393263
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|162219191|gb|FC396630.1|FC396630
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|208395218|gb|DC916027.1|DC916027
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|67720311|gb|BJ970570.1|BJ970570
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|37851880|gb|BJ609888.1|BJ609888
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|162164732|gb|FC340779.1|FC340779
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|162278511|gb|FC453973.1|FC453973
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|37834751|gb|BJ592763.1|BJ592763
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|67698281|gb|BJ958514.1|BJ958514
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|162277366|gb|FC453172.1|FC453172
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|162278510|gb|FC453972.1|FC453972
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|37847513|gb|BJ605521.1|BJ605521
EST:     TGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: TGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|162219190|gb|FC396629.1|FC396629
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|162237880|gb|FC412507.1|FC412507
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|37826715|gb|BJ584727.1|BJ584727
EST:     GG-TTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|18339112|gb|BJ171138.1|BJ171138
EST:     GGTTTATTCTGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|67728189|gb|BJ978448.1|BJ978448
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|37821669|gb|BJ579735.1|BJ579735
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|37849484|gb|BJ607492.1|BJ607492
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|37830352|gb|BJ588364.1|BJ588364
EST:     GGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|37833051|gb|BJ591063.1|BJ591063
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|67697830|gb|BJ958063.1|BJ958063
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|208381978|gb|DC923837.1|DC923837
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|18335080|gb|BJ167098.1|BJ167098
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGGTTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
EST: gi|162273731|gb|FC449454.1|FC449454
EST:     GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG                         GTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA
genomic: GGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 33 (downstream exon)
Score: 43

GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAGgttggttcct ... aataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAAGGTTTGCTG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctgactcctctttttgtctttttcgttttctttttgaaataaaataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAAGGTTTGCTG
 ttctgac  putative branch site (score: 43)
                     tttttcgttttctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acttaagagcataaatttatctatctgaattgttcaagactccttattctgactcctctttttgtctttttcgttttctttttgaaataaaataaaacagGTATCTAGTAACGATGCTGTGGAGATGGCTAAGCAGCTTGCCCTGAAGGAAGGTTTGCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
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