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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttttccaggttatctgattcaatcttttctagcgttggttgaggtatttcgtcttactttctagactttctaatttagcaagtttcaatacgctcatctaatatatagtcatgaatgcaacagAACTTTCAAAATATGAACACAGGCTATAATTATAAGGACTGTATTGGGTTGAAAGTGAAACCCCGCCAAGGCGATGCTCTTCTTTTCTATTCAATGCATC

Basic information

species Physcomitrella patens
transcript PP1S172_91V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37832455|gb|BJ590467.1|BJ590467
EST:     TTTATTTATCAGACGTCGAAGAGGGCGGAGAAACGATGTTTCCCTTCGAA                         AACTTTCAAAATATGAACACAGGCTATAATTATAAGGACTGTATTGGGTTG
genomic: TTTATTTATCAGACGTCGAAGAGGGCGGAGAAACGATGTTTCCCTTCGAAgtaagttttt ... aatgcaacagAACTTTCAAAATATGAACACAGGCTATAATTATAAGGACTGTATTGGGTTG
EST: gi|208356573|gb|DC922363.1|DC922363
EST:     TTTATTTATCAGACGTCGAAGAGGGCGGAGAAACGATGTTTCCCTTCGAA                         AACTTTCAAAATATGAACACAGGCTATAATTATAAGGACTGTATTGGGTTG
genomic: TTTATTTATCAGACGTCGAAGAGGGCGGAGAAACGATGTTTCCCTTCGAAgtaagttttt ... aatgcaacagAACTTTCAAAATATGAACACAGGCTATAATTATAAGGACTGTATTGGGTTG
EST: gi|67691966|gb|BJ952199.1|BJ952199
EST:     TTTATTTATCAGACGTCGAAGAGGGCGGAGAAACGATGTTTCCCTTCGAA                         AACTTTCAAAATATGAACACAGGCTATAATTATAAGGACTGTATTGGGTTG
genomic: TTTATTTATCAGACGTCGAAGAGGGCGGAGAAACGATGTTTCCCTTCGAAgtaagttttt ... aatgcaacagAACTTTCAAAATATGAACACAGGCTATAATTATAAGGACTGTATTGGGTTG
EST: gi|162149917|gb|FC326240.1|FC326240
EST:     TTTATTTATCAGACGTCGAAGAGGGCGGAGAAACGATGTTTCCCTTCGAA                         AACTTTCAAAATATGAACACAGGCTATAATTATAAGGACTGTATTGGGTTG
genomic: TTTATTTATCAGACGTCGAAGAGGGCGGAGAAACGATGTTTCCCTTCGAAgtaagttttt ... aatgcaacagAACTTTCAAAATATGAACACAGGCTATAATTATAAGGACTGTATTGGGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctaatttagcaagtttcaatacgctcatctaatatatagtcatgaatgcaacagAACTTTCAAAATATGAACACAGGCTATAATTATAAGGACTGTATTGGGTTGAAAGTGAAACCCCGCCAAGGCGATGCTCTTCTTTTCTATTCAATGCATC
                         tcatctaatatata  TA-rich tract