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gttcgttattttctctgattttcttaaatccgaggtcatgtttttgcttacacatgttttgacgtacaatatttctctacagtactaaagtaaacacacttgtattgcagTTGGATGCGGGGAAATTGAGAAAACTTCGACCAGCATTTAAATCAGATGGTGGTTCTGTTACAGCTGGCAATGCTTCAAGTATCAG
species | Physcomitrella patens |
transcript | PP1S160_44V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCAAACCATCCA-TTTTGNTGATAAAGATGATGGAATCGATAAG TTGGATGCGGGG-AANTGAGAAAACTTCGACCAGCA-TTNAATCAGATGGTEST: gi|100384912|gb|BY969647.1|BY969647
genomic: GCAAACCATCCATTTTTGTTGATAAAGATGATGGAATCGATAAGgttcgttatt ... tgtattgcagTTGGATGCGGGGAAATTGAGAAAACTTCGACCAGCATTTAAATCAGATGGT
EST: AGAG-CAAANCCATCCNATTTTTGT-GATAAAGATGATGGAATCGATAAG TTGGATGCNGGGAAATTGAGAAAACTTCGACCAGCATTTAAATCAGAATGGEST: gi|208372747|gb|DC952634.1|DC952634
genomic: -GAGGCAAA-CCATCC-ATTTTTGTTGATAAAGATGATGGAATCGATAAGgttcgttatt ... tgtattgcagTTGGATGCGGGGAAATTGAGAAAACTTCGACCAGCATTTAAATCAGA-TGG
EST: GAAGAGGC-AACCATCCA-TTTTGNTGATAAAGATGATGGAATCGATAAG -TGGATGC-GGGAAA-TGAGAAAACTTCGACCAGCATTTAAATCAGATGGTEST: gi|162258773|gb|FC434572.1|FC434572
genomic: GAAGAGGCAAACCATCCATTTTTGTTGATAAAGATGATGGAATCGATAAGgttcgttatt ... tgtattgcagTTGGATGCGGGGAAATTGAGAAAACTTCGACCAGCATTTAAATCAGATGGT
EST: GAAGAGGCAAACCATCCATTTTTGTTGATAAAGATGATGGAATCGATAAG TTGGATGCGGGGAAATTGAGAAAACTTCGACCAGCATTTAAATCAGATGGTEST: gi|67727140|gb|BJ977399.1|BJ977399
genomic: GAAGAGGCAAACCATCCATTTTTGTTGATAAAGATGATGGAATCGATAAGgttcgttatt ... tgtattgcagTTGGATGCGGGGAAATTGAGAAAACTTCGACCAGCATTTAAATCAGATGGT
EST: GAAGAGGCAAACCATCCATTTTTGTTGATAAAGATGATGGAATCGATAAG TTGGATGCGGGGAAATTGAGAAAACTTCGACCAGCATTTAAATCAGATGGTEST: gi|22132646|gb|BQ827270.1|BQ827270
genomic: GAAGAGGCAAACCATCCATTTTTGTTGATAAAGATGATGGAATCGATAAGgttcgttatt ... tgtattgcagTTGGATGCGGGGAAATTGAGAAAACTTCGACCAGCATTTAAATCAGATGGT
EST: GAAGAGGCAAACCATCCATTTTTGTTGATAAAGATGATGGAATCGATAAG TTGGATGCGGGGAAATTGAGAAAACTTCGACCAGCATTTAAATCAGATGGTEST: gi|208385682|gb|DC952843.1|DC952843
genomic: GAAGAGGCAAACCATCCATTTTTGTTGATAAAGATGATGGAATCGATAAGgttcgttatt ... tgtattgcagTTGGATGCGGGGAAATTGAGAAAACTTCGACCAGCATTTAAATCAGATGGT
EST: TTTTG-TGATAAAGATGA-NGAATCGATAAG -TGGATGCGGGGAAA-TGAGAAAACTTCGACCAGCA-TTAAATCAGATGGTEST: gi|40781593|gb|AJ583523.1|AJ583523
genomic: TTTTGTTGATAAAGATGATGGAATCGATAAGgttcgttatt ... tgtattgcagTTGGATGCGGGGAAATTGAGAAAACTTCGACCAGCATTTAAATCAGATGGT
EST: GAAGAGGCAAACCATCCATTTTTGTTGATAAAGATGATGGAATCGATAAG TTGGATGCGGGGAAATTGAGAAAACTTCGACCAGCATTTAAATCAGATGGTEST: gi|162177571|gb|FC352429.1|FC352429
genomic: GAAGAGGCAAACCATCCATTTTTGTTGATAAAGATGATGGAATCGATAAGgttcgttatt ... tgtattgcagTTGGATGCGGGGAAATTGAGAAAACTTCGACCAGCATTTAAATCAGATGGT
EST: GAAGAGGCAAACCATCCATTTTTGTTGATAAAGATGATGGAATCGATAAG TTGGATGCGGGGAAATTGAGAAAACTTCGACCAGCATTTAAATCAGATGGTEST: gi|208389390|gb|DC953228.1|DC953228
genomic: GAAGAGGCAAACCATCCATTTTTGTTGATAAAGATGATGGAATCGATAAGgttcgttatt ... tgtattgcagTTGGATGCGGGGAAATTGAGAAAACTTCGACCAGCATTTAAATCAGATGGT
EST: TTTG-TGATAAAGATGATGG-ATCGATNAG -TGGATGC-GGGAAA-TGAG-AAACNTCGACCAGCATTTAAATCAGATGGTEST: gi|162177570|gb|FC352428.1|FC352428
genomic: TTTGTTGATAAAGATGATGGAATCGATAAGgttcgttatt ... tgtattgcagTTGGATGCGGGGAAATTGAGAAAACTTCGACCAGCATTTAAATCAGATGGT
EST: TAAAGATGAGGGAATCGATAAG TTGGATGCGGGGAAATTGAGAAAACTTCGACCAGCA-TTAAATCAGATGGTEST: gi|208362110|gb|DC943523.1|DC943523
genomic: TAAAGATGATGGAATCGATAAGgttcgttatt ... tgtattgcagTTGGATGCGGGGAAATTGAGAAAACTTCGACCAGCATTTAAATCAGATGGT
EST: GAAGAGGCAAACCATCCATTTTTGTTGATAAAGATGATGGAATCGATAAG TTGGATGCGGGGAAATTGAGAAAACTTCGACCAGCATTTAAATCAGATGGTEST: gi|208367940|gb|DC955375.1|DC955375
genomic: GAAGAGGCAAACCATCCATTTTTGTTGATAAAGATGATGGAATCGATAAGgttcgttatt ... tgtattgcagTTGGATGCGGGGAAATTGAGAAAACTTCGACCAGCATTTAAATCAGATGGT
EST: TTTG-TGATAAAGATGA-NGAATCGATAAG -TGGATGCGGGG-AANTGAG-AAACNTCGACCAGCA-TTAAATCAGATGGTEST: gi|208353436|gb|DC922490.1|DC922490
genomic: TTTGTTGATAAAGATGATGGAATCGATAAGgttcgttatt ... tgtattgcagTTGGATGCGGGGAAATTGAGAAAACTTCGACCAGCATTTAAATCAGATGGT
EST: AACCNTCCA-TTTTGTTGAT-AAGATGA-NGAATCGATAAG -TGGATGCGGGG-AATTGAGAAAACTTCGACCAGCATTT-AATCAGATGGTEST: gi|162166659|gb|FC343551.1|FC343551
genomic: AACCATCCATTTTTGTTGATAAAGATGATGGAATCGATAAGgttcgttatt ... tgtattgcagTTGGATGCGGGGAAATTGAGAAAACTTCGACCAGCATTTAAATCAGATGGT
EST: GAAGAGGCAAACCATCCATTTTTGTTGATAAAGATGATGGAATCGATAAG TTGGATGCGGGGAAATTGAGAAAACTTCGACCAGCATTTAAATCAGATGGTEST: gi|19782978|gb|BQ039945.1|BQ039945
genomic: GAAGAGGCAAACCATCCATTTTTGTTGATAAAGATGATGGAATCGATAAGgttcgttatt ... tgtattgcagTTGGATGCGGGGAAATTGAGAAAACTTCGACCAGCATTTAAATCAGATGGT
EST: GAAGAGGCAAACCATCCATTTTTGTTGATAAAGATGATGGAATCGATAAG TTGGATGCGGGGAAATTGAGAAAACTTCGACCAGCATTTAAATCAGATGGT
genomic: GAAGAGGCAAACCATCCATTTTTGTTGATAAAGATGATGGAATCGATAAGgttcgttatt ... tgtattgcagTTGGATGCGGGGAAATTGAGAAAACTTCGACCAGCATTTAAATCAGATGGT
gttttgacgtacaatatttctctacagtactaaagtaaacacacttgtattgcagTTGGATGCGGGGAAATTGAGAAAACTTCGACCAGCATTTAAATCAGATGGTGGTTCTGTTACAGCTGGCAATGCTTCAAGTATCAG
tactaaa putative branch site (score: 11)
tacaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgttattttctctgattttcttaaatccgaggtcatgtttttgcttacacatgttttgacgtacaatatttctctacagtactaaagtaaacacacttgtattgcagTTGGATGCGGGGAAATTGAGAAAACTTCGACCAGCATTTAAATCAGATGGTGGTTCTGTTACAGCTGGCAATGCTTCAAGTATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG