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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagagttgttgatgcggttcatatagaaccgcgtattagaataattgctatagggaaagactcgtattattcattcgttttaaatcaggcttagtaatagtagttgtttgattggtcggaaggtgacgtcatttcgtcttgttgcttttccacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATTGCCAAGAATGCCGGCGTGAACGGGAGTGTGGTGGTTGAGAAG

Basic information

species Physcomitrella patens
transcript PP1S15_485V6.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162166112|gb|FC343381.1|FC343381
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACAT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACAT
EST: gi|162184448|gb|FC359194.1|FC359194
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162177439|gb|FC352972.1|FC352972
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162194595|gb|FC369986.1|FC369986
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|67508408|gb|BJ941275.1|BJ941275
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162184149|gb|FC358895.1|FC358895
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162256595|gb|FC432905.1|FC432905
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162166167|gb|FC343410.1|FC343410
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162219401|gb|FC396918.1|FC396918
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162154270|gb|FC330401.1|FC330401
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162186555|gb|FC363319.1|FC363319
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|208388855|gb|DC945431.1|DC945431
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162188247|gb|FC364741.1|FC364741
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162182314|gb|FC357185.1|FC357185
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162255426|gb|FC431840.1|FC431840
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|37839241|gb|BJ597249.1|BJ597249
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|67691625|gb|BJ951858.1|BJ951858
EST:     CAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|37820953|gb|BJ579019.1|BJ579019
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162179103|gb|FC356504.1|FC356504
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|67578711|gb|BJ950878.1|BJ950878
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162174052|gb|FC350567.1|FC350567
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162186556|gb|FC363320.1|FC363320
EST:     CCAGCANAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162226061|gb|FC401027.1|FC401027
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162161062|gb|FC337047.1|FC337047
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162198440|gb|FC375275.1|FC375275
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162171511|gb|FC347813.1|FC347813
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162166111|gb|FC343380.1|FC343380
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162191123|gb|FC367385.1|FC367385
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162191124|gb|FC367386.1|FC367386
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162173178|gb|FC348725.1|FC348725
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162153514|gb|FC329608.1|FC329608
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|67697957|gb|BJ958190.1|BJ958190
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162155280|gb|FC331217.1|FC331217
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162150358|gb|FC326630.1|FC326630
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162179104|gb|FC356505.1|FC356505
EST:     CCAGCANAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162183968|gb|FC359338.1|FC359338
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162153381|gb|FC329891.1|FC329891
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162154099|gb|FC330542.1|FC330542
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|67698656|gb|BJ958889.1|BJ958889
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162219400|gb|FC396917.1|FC396917
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162150982|gb|FC327878.1|FC327878
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162198441|gb|FC375276.1|FC375276
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162161163|gb|FC336511.1|FC336511
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162173823|gb|FC349415.1|FC349415
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162180841|gb|FC358342.1|FC358342
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
EST: gi|162177440|gb|FC352973.1|FC352973
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACA
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACA
EST: gi|162184148|gb|FC358894.1|FC358894
EST:     CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAG                         GTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT
genomic: CCAGCAAAGTGGATGCTATCAAGGAATCTTTAGACAACGACGAGCAAAAGgtgagagttg ... cacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgattggtcggaaggtgacgtcatttcgtcttgttgcttttccacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATTGCCAAGAATGCCGGCGTGAACGGGAGTGTGGTGGTTGAGAAG
 gtttgat  putative branch site (score: 5)
                               tcttgttgcttttcc  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagagttgttgatgcggttcatatagaaccgcgtattagaataattgctatagggaaagactcgtattattcattcgttttaaatcaggcttagtaatagtagttgtttgattggtcggaaggtgacgtcatttcgtcttgttgcttttccacttgacagGTTGGTGCAGACATCGTGAAACGGGCTTTGTGCTACCCTCTGAAGCTTATTGCCAAGAATGCCGGCGTGAACGGGAGTGTGGTGGTTGAGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG