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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtacttttgggttcttttttctccttaggtaggtaaccagtaatgttttttcttaatgtatgtaattccgatcgagttttgtttttaccatgtagaagcttgggaatgcacctgtccttaatatctctgctggtcaaattatcacgtgcccatgtttttcactctgaacgtgaatttcgttccttgcagAGCGTGTGAAGCTTTGAAGAATTGTCTCCCTGAACTTCTTCAAAACGGCACCTTCAATAACTGTCTACGG

Basic information

species Physcomitrella patens
transcript PP1S15_262V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37850874|gb|BJ608882.1|BJ608882
EST:     TGATAATCCGAG                         AGCGTGTGAAGCTTTGAAGAATTGTCTCCCTGAACTTCTTCAAAACGGCAC
genomic: TGATAATCCGAGgtgagtactt ... ttccttgcagAGCGTGTGAAGCTTTGAAGAATTGTCTCCCTGAACTTCTTCAAAACGGCAC
EST: gi|37833386|gb|BJ591398.1|BJ591398
EST:     TTCGACTTTCTGATAATCCGAG                         AGCGTGTGAAGCTTTGAAGAATTGTCTCCCTGAACTTCTTCAAAACGGCAC
genomic: TTCGACTTTCTGATAATCCGAGgtgagtactt ... ttccttgcagAGCGTGTGAAGCTTTGAAGAATTGTCTCCCTGAACTTCTTCAAAACGGCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaattatcacgtgcccatgtttttcactctgaacgtgaatttcgttccttgcagAGCGTGTGAAGCTTTGAAGAATTGTCTCCCTGAACTTCTTCAAAACGGCACCTTCAATAACTGTCTACGG
                                        tttcgttcctt  CT-rich tract
                 atgttttt  TA-rich tract