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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgaagatttggtttactcgctcctaaacgtcaggtttgttacatgcatgtttctcttttcgagttatatttctcaatattgattcagggtatgattccagGTTTCCAAGAGACTGGAGGAACTTCGTCAAGAATATGAACGCATGATGAAACCTCAACCACATCCAGAGAACCCCCATATATAAT

Basic information

species Physcomitrella patens
transcript PP1S15_13V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67721946|gb|BJ972205.1|BJ972205
EST:     AAGATTCTCTGCAGCCTGATGTTCTTCTGCCATTAGCTTACAATATCAAG                         GTTTCCAAGAGACTGGAGGAACTTCGTCAAGAATATGAACGCATGATGAAA
genomic: AAGATTCTCTGCAGCCTGATGTTCTTCTGCCATTAGCTTACAATATCAAGgttgattcat ... atgattccagGTTTCCAAGAGACTGGAGGAACTTCGTCAAGAATATGAACGCATGATGAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgtttctcttttcgagttatatttctcaatattgattcagggtatgattccagGTTTCCAAGAGACTGGAGGAACTTCGTCAAGAATATGAACGCATGATGAAACCTCAACCACATCCAGAGAACCCCCATATATAAT
                               tattgat  putative branch site (score: 3)
 ttatatttctcaatat  TA-rich tract