Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagacttaatttctctccagttgtttttgaagggaatatttaatgaaggttcaagctaagttgttcatttataaaaccgtcatgatctctgaatcgaagaaactaagtttttccagcagtgctctattcttggagcttctctaacaaattttgctttgattactggtaaacagAGCGACCATTGGAGGGATTTCACATAGTTGTGGACGCAGGGAATGGGGCAGGCGGCTTCTTCGCA

Basic information

species Physcomitrella patens
transcript PP1S152_87V6.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S152_87V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: LOC_Os07g26610.1 (Oryza sativa), 3'ss of exon 7
gtgagacttaatttctctccagttgtttttgaagggaatatttaatgaaggttcaagctaagttgttcatttataaaaccgtcatgatctctgaatcgaagaaactaagtttttccagcagtgctcta-ttcttggagcttctctaacaaattttgctttgattactggtaaacagAGCGACCATTGGAGGGATTTCACATAGTTGTGGACGCAGGGAATGGGGCAGGCGGCTTCTTCGCA
                                                        | | |  ||    || | |||||  |  |||      ||| |   ||  ||| || |   |    |     |  || |||  ||| | |         || | | ||   ||||    |||   |||| |||||||| | |||||||| ||||| ||||||||||| ||||| ||||| || |  
--------------------------------------------------------gttgaaatg---gttgagaaaacgattgtga------aatggttaaatataaattatgataaagataagaaaactcctggttcttatgt--------ctgttctcata--tggtct-tagAAAAACCACTGGAGGGACTGCACATAGTCGTGGATGCAGGGAATGGAGCAGGTGGCTTTTTTGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162196622|gb|FC374912.1|FC374912
EST:     GTATACTGCTGATCTTGTAGATGCCGTTCGCAAAGGAGCTGGAGGAGTTG                         AGCGACCATTGGAGGGATTTCACATAGTTGTGGACGCAGGGAATGGGGCAG
genomic: GTATACTGCTGATCTTGTAGATGCCGTTCGCAAAGGAGCTGGAGGAGTTGgtgagactta ... tggtaaacagAGCGACCATTGGAGGGATTTCACATAGTTGTGGACGCAGGGAATGGGGCAG
EST: gi|100352594|gb|BY945350.1|BY945350
EST:     GTATACTGCTGATCTTGTAGATGCCGTTCGCAAAGGAGCTGGAGGAGTTG                         AGCGACCATTGGAGGGATTTCACATAGTTGTGGACGCAGGGAATGGGGCAG
genomic: GTATACTGCTGATCTTGTAGATGCCGTTCGCAAAGGAGCTGGAGGAGTTGgtgagactta ... tggtaaacagAGCGACCATTGGAGGGATTTCACATAGTTGTGGACGCAGGGAATGGGGCAG
EST: gi|162196876|gb|FC375153.1|FC375153
EST:     GTATACTGCTGATCTTGTAGATGCCGTTCGCAAAGGAGCTGGAGGAGTTG                         AGCGACCATTGGAGGGATTTCACATAGTTGTGGACGCAGGGAATGGGGCAG
genomic: GTATACTGCTGATCTTGTAGATGCCGTTCGCAAAGGAGCTGGAGGAGTTGgtgagactta ... tggtaaacagAGCGACCATTGGAGGGATTTCACATAGTTGTGGACGCAGGGAATGGGGCAG
EST: gi|162159476|gb|FC336265.1|FC336265
EST:     GTATACTGCTGATCTTGTAGATGCCGTTCGCAAAGGAGCTGGAGGAGTTG                         AGCGACCATTGGAGGGATTTCACATAGTTGTGGACGCAGGGAATGGGGCAG
genomic: GTATACTGCTGATCTTGTAGATGCCGTTCGCAAAGGAGCTGGAGGAGTTGgtgagactta ... tggtaaacagAGCGACCATTGGAGGGATTTCACATAGTTGTGGACGCAGGGAATGGGGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgctctattcttggagcttctctaacaaattttgctttgattactggtaaacagAGCGACCATTGGAGGGATTTCACATAGTTGTGGACGCAGGGAATGGGGCAGGCGGCTTCTTCGCA
                       taacaaatttt  TA-rich tract