1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tatttttgttttccacccgggaagaatttgctttcctcagttcactggggagtttatgtttcttagaactgaatgctgatttgaggatatggttgtgcagAGCGAGCAATTCATAGACATGGTGTACCGAGAGATGATGCATGCGCACAGTGTCTGATGCATTGGAAGTATCGAGGCATGATAAGGTTTTCCCTGACTGT
species | Physcomitrella patens |
transcript | PP1S14_29V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TACCAATAACCAGGGATGGAGTTCGAGAAGCACTTAATCGCCTGGTCAAG AGCGAGCAATTCATAGACATGGTGTACCGAGAGATGATGCATGCGCACAGTEST: gi|37825254|gb|BJ583320.1|BJ583320
genomic: TACCAATAACCAGGGATGGAGTTCGAGAAGCACTTAATCGCCTGGTCAAGgtaaaacttc ... ggttgtgcagAGCGAGCAATTCATAGACATGGTGTACCGAGAGATGATGCATGCGCACAGT
EST: TACCAATAACCAGGGATGGAGTTCGAGAAGCACTTAATCGCCTGGTCAAG AGCGAGCAATTCATAGACATGGTGTACCGAGAGATGATGCATGCGCACAGTEST: gi|37821012|gb|BJ579078.1|BJ579078
genomic: TACCAATAACCAGGGATGGAGTTCGAGAAGCACTTAATCGCCTGGTCAAGgtaaaacttc ... ggttgtgcagAGCGAGCAATTCATAGACATGGTGTACCGAGAGATGATGCATGCGCACAGT
EST: TACCAATAACCAGGGATGGAGTTCGAGAAGCACTTAATCGCCTGGTCAAG AGCGAGCAATTCATAGACATGGTGTACCGAGAGATGATGCATGCGCACAGTEST: gi|37831962|gb|BJ589974.1|BJ589974
genomic: TACCAATAACCAGGGATGGAGTTCGAGAAGCACTTAATCGCCTGGTCAAGgtaaaacttc ... ggttgtgcagAGCGAGCAATTCATAGACATGGTGTACCGAGAGATGATGCATGCGCACAGT
EST: TACCAATAACCAGGGATGGAGTTCGAGAAGCACTTAATCGCCTGGTCAAG AGCGAGCAATTCATAGACATGGTGTACCGAGAGATGATGCATGCGCACAGT
genomic: TACCAATAACCAGGGATGGAGTTCGAGAAGCACTTAATCGCCTGGTCAAGgtaaaacttc ... ggttgtgcagAGCGAGCAATTCATAGACATGGTGTACCGAGAGATGATGCATGCGCACAGT
tggggagtttatgtttcttagaactgaatgctgatttgaggatatggttgtgcagAGCGAGCAATTCATAGACATGGTGTACCGAGAGATGATGCATGCGCACAGTGTCTGATGCATTGGAAGTATCGAGGCATGATAAGGTTTTCCCTGACTGT
tgctgat putative branch site (score: 26)
tttatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttttgttttccacccgggaagaatttgctttcctcagttcactggggagtttatgtttcttagaactgaatgctgatttgaggatatggttgtgcagAGCGAGCAATTCATAGACATGGTGTACCGAGAGATGATGCATGCGCACAGTGTCTGATGCATTGGAAGTATCGAGGCATGATAAGGTTTTCCCTGACTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG