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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgatattttatgctattcctacaatcaagttacaatcaaggtttgacatgaagccgatacaacttaacttgttatgttcagatctgaattgtctgggtgcctacttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATCGCCAAGAATGCTGGTGTGAACGGAAGCGTGGTGGTTGAGAAG

Basic information

species Physcomitrella patens
transcript PP1S14_298V6.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S14_298V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GLYMA08G18760.2 (Glycine max), 3'ss of exon 10
-----------------------------gtaagtgat----attttatgctattcctacaatcaagttacaatcaaggtttgacatgaagccgatacaacttaactt--gttatgttcagatctgaattgtctgggtgcctacttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATCGCCAAGAATGCTGGTGTGAACGGAAGCGTGGTGGTTGAGAAG-------
                              |||||       || || || ||||  |    |   ||       || | |    |         |  || | ||||      ||| |||   ||  |   | || ||    | || |||||||||| ||||| |||||||   | ||  |  |||||||||||||||| || ||||||||||||||||| || || || || ||   |||||||       
gtgagtcatttatttgatatggagagaatataagtttcctggatgttgtgatattttttgttttgggtgctgggaaatgctcctgactgttgttttcaaattcaactccaaacatggtcatgacttcaaaat-tgtgt-ttaatttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAGAATGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAGGTATCAA

upper sequence: PP1S14_298V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GLYMA08G18760.1 (Glycine max), 3'ss of exon 10
-----------------------------gtaagtgat----attttatgctattcctacaatcaagttacaatcaaggtttgacatgaagccgatacaacttaactt--gttatgttcagatctgaattgtctgggtgcctacttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATCGCCAAGAATGCTGGTGTGAACGGAAGCGTGGTGGTTGAGAAG
                              |||||       || || || ||||  |    |   ||       || | |    |         |  || | ||||      ||| |||   ||  |   | || ||    | || |||||||||| ||||| |||||||   | ||  |  |||||||||||||||| || ||||||||||||||||| || || || || ||   |||||||
gtgagtcatttatttgatatggagagaatataagtttcctggatgttgtgatattttttgttttgggtgctgggaaatgctcctgactgttgttttcaaattcaactccaaacatggtcatgacttcaaaat-tgtgt-ttaatttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAGAATGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAG

upper sequence: PP1S14_298V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GLYMA08G18760.3 (Glycine max), 3'ss of exon 10
-------------------------gtaagtg----atattttatgctattcctacaatcaagttacaatcaaggtttgacatgaagccgatacaacttaactt--gttatgttcagatctgaattgtctgggtgcctacttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATCGCCAAGAATGCTGGTGTGAACGGAAGCGTGGTGGTTGAGAAG
                          |||||       || || || ||||  |    |   ||       || | |    |         |  || | ||||      ||| |||   ||  |   | || ||    | || |||||||||| ||||| |||||||   | ||  |  |||||||||||||||| || ||||||||||||||||| || || || || ||   |||||||
gtcatttatttgatatggagagaatataagtttcctggatgttgtgatattttttgttttgggtgctgggaaatgctcctgactgttgttttcaaattcaactccaaacatggtcatgacttcaaaat-tgtgt-ttaatttttgcaggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAGAATGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAG

upper sequence: PP1S14_298V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: AT3G13470.1 (Arabidopsis thaliana), 3'ss of exon 11
gtaagtgatattttatgctattcctacaatcaagttacaatcaaggtttgacatgaagccgatacaacttaacttgttatgttcagatctgaattgtctgggtgcctacttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATCGCCAAGAATGCTGGTGTGAACGGAAGCGTGGTGGTTGAGAAG
                            ||      | |||||||  ||   |  ||     | ||| ||   |  |  |  |    | | || | | |     || |  |||  ||||||| || || ||||| |   | ||  || |||||||| |||||||||| || |||||||||||||| || ||||| || ||    ||||||
-------------------------gtgattgg--caaaatcaagaattttga--aattttttgcaaattgcttgctcttactgcattttcaactattt-----cccatctct--agGTTGGAGCGGAAATTGTTAAAAGAGCACTGAGTTACCCTCTGAAATTGATAGCTAAGAATGCTGGTGTTAATGGAAGTGTTGTCAGCGAGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162162748|gb|FC337802.1|FC337802
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|162173846|gb|FC349438.1|FC349438
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|162274031|gb|FC450378.1|FC450378
EST:     GATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: GATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|18333501|gb|BJ165516.1|BJ165516
EST:     AAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: AAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|162248294|gb|FC422548.1|FC422548
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|162153950|gb|FC329457.1|FC329457
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|162158908|gb|FC334794.1|FC334794
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|162176836|gb|FC353344.1|FC353344
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|162175540|gb|FC350971.1|FC350971
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|162187435|gb|FC362657.1|FC362657
EST:     CGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|162181645|gb|FC357947.1|FC357947
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|67723761|gb|BJ974020.1|BJ974020
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|162156888|gb|FC333042.1|FC333042
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|67725517|gb|BJ975776.1|BJ975776
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|37844241|gb|BJ602249.1|BJ602249
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|208398728|gb|DC916251.1|DC916251
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|208393744|gb|DC946066.1|DC946066
EST:     CCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGNCCTTGTGTTACCCTTNGAAATTGATC
genomic: CCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|162193666|gb|FC371245.1|FC371245
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|162162747|gb|FC337801.1|FC337801
EST:     GATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: GATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|208379255|gb|DC927266.1|DC927266
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|208356169|gb|DC918409.1|DC918409
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|162171349|gb|FC346442.1|FC346442
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|162170823|gb|FC347437.1|FC347437
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|162162984|gb|FC339299.1|FC339299
EST:     GGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: GGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|208345188|gb|DC925685.1|DC925685
EST:     CTAGCAAAGTNAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCNTCGTGNTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|162248295|gb|FC422549.1|FC422549
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|162195953|gb|FC372150.1|FC372150
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|37840202|gb|BJ598210.1|BJ598210
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|162274032|gb|FC450379.1|FC450379
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|162176837|gb|FC353345.1|FC353345
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|162167159|gb|FC343635.1|FC343635
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|162164012|gb|FC339300.1|FC339300
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|162227586|gb|FC403528.1|FC403528
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|162158909|gb|FC334795.1|FC334795
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|37828026|gb|BJ586038.1|BJ586038
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|37833563|gb|BJ591575.1|BJ591575
EST:     GGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGNCCTTGTGTTACCCTTTGAAATTGATC
genomic: GGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|162192858|gb|FC370177.1|FC370177
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|162156889|gb|FC333043.1|FC333043
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|208362988|gb|DC957957.1|DC957957
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|37846332|gb|BJ604340.1|BJ604340
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACNTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|162192859|gb|FC370178.1|FC370178
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|162255991|gb|FC431755.1|FC431755
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|162157417|gb|FC333194.1|FC333194
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
EST: gi|208370457|gb|DC952160.1|DC952160
EST:     CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGG                         GTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC
genomic: CTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 31

TGTGGAGGAAGGCATTGTTGTTGGTGGAGGATGTACCTTGTTGAGATTAGCTAGCAAAGTTAGTGCTATTGTTTCAACCTTGGATAACGACGAGCAGAGGgtaagtgata ... acttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATCGCCAAGAATGCTGGTGTGAACGGAAGCGTGGTGGTTGAGAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacaacttaacttgttatgttcagatctgaattgtctgggtgcctacttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATCGCCAAGAATGCTGGTGTGAACGGAAGCGTGGTGGTTGAGAAG
    acttaac  putative branch site (score: 31)
                                          cctacttct  putative PPT
      ttaactt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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gtaagtgatattttatgctattcctacaatcaagttacaatcaaggtttgacatgaagccgatacaacttaacttgttatgttcagatctgaattgtctgggtgcctacttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATCGCCAAGAATGCTGGTGTGAACGGAAGCGTGGTGGTTGAGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG