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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gagtatccatgttggataagatgtgcagatgtgttttggctcaatgtcttaccacagtttattgttcaagttgtaagtaacaggaaaatcgcttttgcagGTTTCACCAACATTGGCCACTCCTGATGCTCTGGAAAAGTACACCCAGTTGACCAGTCATCCCTTGCACTCGAGCTCGAAACCAGGCATTCTGTCTATTG

Basic information

species Physcomitrella patens
transcript PP1S14_250V6.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162167818|gb|FC344548.1|FC344548
EST:     AGCTGACTGATTGTAATGCCCGTCTTTCTGGACAACGTAAAAAGCGACAG                         GTTTCACCAACATTGGCCACTCCTGATGCTCTGGAAAAGTACACCCAGTTG
genomic: AGCTGACTGATTGTAATGCCCGTCTTTCTGGACAACGTAAAAAGCGACAGgtttgttctc ... gcttttgcagGTTTCACCAACATTGGCCACTCCTGATGCTCTGGAAAAGTACACCCAGTTG
EST: gi|100381276|gb|BY950059.1|BY950059
EST:     AGCTGACTGATTGTAATGCCCGTCTTTCTGGACAACGTAAAAAGCGACAG                         GTTTCACCAACATTGGCCACTCCTGATGCTCTGGAAAAGTACACCCAGTTG
genomic: AGCTGACTGATTGTAATGCCCGTCTTTCTGGACAACGTAAAAAGCGACAGgtttgttctc ... gcttttgcagGTTTCACCAACATTGGCCACTCCTGATGCTCTGGAAAAGTACACCCAGTTG
EST: gi|162238756|gb|FC419054.1|FC419054
EST:     AGCTGACTGATTGTAATGCCCGTCTTTCTGGACAACGTAAAAAGCGACAG                         GTTTCACCAACATTGGCCACTCCTGATGCTCTGGAAAAGTACACCCAGTTG
genomic: AGCTGACTGATTGTAATGCCCGTCTTTCTGGACAACGTAAAAAGCGACAGgtttgttctc ... gcttttgcagGTTTCACCAACATTGGCCACTCCTGATGCTCTGGAAAAGTACACCCAGTTG
EST: gi|162182529|gb|FC357504.1|FC357504
EST:     AGCTGACTGATTGTAATGCCCGTCTTTCTGGACAACGTAAAAAGCGACAG                         GTTTCACCAACATTGGCCACTCCTGATGCTCTGGAAAAGTACACCCAGTTG
genomic: AGCTGACTGATTGTAATGCCCGTCTTTCTGGACAACGTAAAAAGCGACAGgtttgttctc ... gcttttgcagGTTTCACCAACATTGGCCACTCCTGATGCTCTGGAAAAGTACACCCAGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcttaccacagtttattgttcaagttgtaagtaacaggaaaatcgcttttgcagGTTTCACCAACATTGGCCACTCCTGATGCTCTGGAAAAGTACACCCAGTTGACCAGTCATCCCTTGCACTCGAGCTCGAAACCAGGCATTCTGTCTATTG
                             aagtaac  putative branch site (score: 2)
                                           tcgctttt  putative PPT
            tttattgtt  TA-rich tract