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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtacttgaattagaatgcctcgtgttgatctactctatatgtgtactgcaaccaatgtttcttgctttccatcaatcactgtttaattttaaatctgcgtgtgtctgttaagcttttttggatttagatgagcctgaacttcattttaacttagcttggcttgtttgacaatgaaacagGAATTGGAAAATCCCGTCATCTTGATCCACGAGAAGAAAATCAACAGTCTTCAAGCGATTCTTCCAGTGCTTGAGCTCGTTGTCAGG

Basic information

species Physcomitrella patens
transcript PP1S149_289V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162198559|gb|FC373405.1|FC373405
EST:     GGGGATATATTTCCCCCTATTTCATCACTAATGCAAAGACCCAGAAAGTG                         GAATTGGAAAATCCCGTCATCTTGATCCACGAGAAGAAAATCAACAGTCTT
genomic: GGGGATATATTTCCCCCTATTTCATCACTAATGCAAAGACCCAGAAAGTGgtgggtactt ... aatgaaacagGAATTGGAAAATCCCGTCATCTTGATCCACGAGAAGAAAATCAACAGTCTT
EST: gi|100389190|gb|BY970940.1|BY970940
EST:     GGGGATATATTTCCCCCTATTTCATCACTAATGCAAAGACCCAGAAAGTG                         GAATTGGAAAATCCCGTCA
genomic: GGGGATATATTTCCCCCTATTTCATCACTAATGCAAAGACCCAGAAAGTGgtgggtactt ... aatgaaacagGAATTGGAAAATCCCGTCA
EST: gi|162159175|gb|FC334346.1|FC334346
EST:     GGGGATATATTTCCCCCTATTTCATCACTAATGCAAAGACCCAGAAAGTG                         GAATTGGAAAATCCCGTCATCTTGATCCACGAGAAGAAAATCAACAGTCTT
genomic: GGGGATATATTTCCCCCTATTTCATCACTAATGCAAAGACCCAGAAAGTGgtgggtactt ... aatgaaacagGAATTGGAAAATCCCGTCATCTTGATCCACGAGAAGAAAATCAACAGTCTT
EST: gi|162183372|gb|FC359287.1|FC359287
EST:     GGGGATATATTTCCCCCTATTTCATCACTAATGCAAAGACCCAGAAAGTG                         GAATTGGAAAATCCCGTCATCTTGATCCACGAGAAGAAAATCAACAGTCTT
genomic: GGGGATATATTTCCCCCTATTTCATCACTAATGCAAAGACCCAGAAAGTGgtgggtactt ... aatgaaacagGAATTGGAAAATCCCGTCATCTTGATCCACGAGAAGAAAATCAACAGTCTT
EST: gi|67576837|gb|BJ949661.1|BJ949661
EST:     TAATGCAAAGACCCAGAAAGTG                         GAATTGGAAAATCCCGTCATCTTGATCCACGAGAAGAAAATCAACAGTCTT
genomic: TAATGCAAAGACCCAGAAAGTGgtgggtactt ... aatgaaacagGAATTGGAAAATCCCGTCATCTTGATCCACGAGAAGAAAATCAACAGTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagatgagcctgaacttcattttaacttagcttggcttgtttgacaatgaaacagGAATTGGAAAATCCCGTCATCTTGATCCACGAGAAGAAAATCAACAGTCTTCAAGCGATTCTTCCAGTGCTTGAGCTCGTTGTCAGG
               ttcattttaactta  TA-rich tract