1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtagacctggaaaaatttctgtcaatgccacgttgccataatagtgatcatagatttcgaggaaacaccgttgatagttgccaacatcttgtcattatagGTAAAGATGATCATGGCAACCAACCGGCCAGATGTTCTTGACCCTGCTCTTCTACGACCTGGTCGTTTGGATCGAAAGATTGAAATTCCACTACCAAATG
species | Physcomitrella patens |
transcript | PP1S13_419V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCCTTATGGAGTTATTGAATCAACTTGATGGTTTTGATCAGCTTGGCAAG GTAAAGATGATCATGGCAACCAACCGGCCAGATGTTCTTGACCCTGCTCTTEST: gi|18335003|gb|BJ167021.1|BJ167021
genomic: CCCTTATGGAGTTATTGAATCAACTTGATGGTTTTGATCAGCTTGGCAAGgtacgtggag ... gtcattatagGTAAAGATGATCATGGCAACCAACCGGCCAGATGTTCTTGACCCTGCTCTT
EST: CCCTTATGGAGTTATTGAATCAACTTGATGGTTTTGATCAGCTTGGCAAG GTAAAGATGATCATGGCAACCAACCGGCCAGATGTTCTTGACCCTGCTCTTEST: gi|37843655|gb|BJ601663.1|BJ601663
genomic: CCCTTATGGAGTTATTGAATCAACTTGATGGTTTTGATCAGCTTGGCAAGgtacgtggag ... gtcattatagGTAAAGATGATCATGGCAACCAACCGGCCAGATGTTCTTGACCCTGCTCTT
EST: CCCTTATGGAGTTATTGAATCAACTTGATGGTTTTGATCAGCTTGGCAAG GTAAAGATGATCATGGCAACCAACCGGCCAGATGTTCTTGACCCTGCTCTTEST: gi|37849919|gb|BJ607927.1|BJ607927
genomic: CCCTTATGGAGTTATTGAATCAACTTGATGGTTTTGATCAGCTTGGCAAGgtacgtggag ... gtcattatagGTAAAGATGATCATGGCAACCAACCGGCCAGATGTTCTTGACCCTGCTCTT
EST: GAGTTATNGAATCAACTTGATGGTTTTGATCAGCTTGGCAAG GTAAAGATGATCATGGCAACCANCCGGCCAGATGTTCTTGACCCTGCTCTTEST: gi|162188781|gb|FC364067.1|FC364067
genomic: GAGTTATTGAATCAACTTGATGGTTTTGATCAGCTTGGCAAGgtacgtggag ... gtcattatagGTAAAGATGATCATGGCAACCAACCGGCCAGATGTTCTTGACCCTGCTCTT
EST: CCCTTATGGAGTTATTGAATCAACTTGATGGTTTTGATCAGCTTGGCAAG GTAAAGATGATCATGGCAACCAACCGGCCAGATGTTCTTGACCCTGCTCTTEST: gi|208367874|gb|DC955337.1|DC955337
genomic: CCCTTATGGAGTTATTGAATCAACTTGATGGTTTTGATCAGCTTGGCAAGgtacgtggag ... gtcattatagGTAAAGATGATCATGGCAACCAACCGGCCAGATGTTCTTGACCCTGCTCTT
EST: CCCTTATGGAGTTATTGAATCAACTTGATGGTTTTGATCAGCTTGGCAAG GTAAAGATGATCATGGCAACCAACCGGCCAGATGTTCTTGACCCTGCTCTTEST: gi|37853467|gb|BJ611475.1|BJ611475
genomic: CCCTTATGGAGTTATTGAATCAACTTGATGGTTTTGATCAGCTTGGCAAGgtacgtggag ... gtcattatagGTAAAGATGATCATGGCAACCAACCGGCCAGATGTTCTTGACCCTGCTCTT
EST: CCCTTATGGAGTTATTGAATCAACTTGATGGTTTTGATCAGCTTGGCAAG GTAAAGATGATCATGGCAACCAACCGGCCAGATGTTCTTGACCCTGCTCTT
genomic: CCCTTATGGAGTTATTGAATCAACTTGATGGTTTTGATCAGCTTGGCAAGgtacgtggag ... gtcattatagGTAAAGATGATCATGGCAACCAACCGGCCAGATGTTCTTGACCCTGCTCTT
gatcatagatttcgaggaaacaccgttgatagttgccaacatcttgtcattatagGTAAAGATGATCATGGCAACCAACCGGCCAGATGTTCTTGACCCTGCTCTTCTACGACCTGGTCGTTTGGATCGAAAGATTGAAATTCCACTACCAAATG
cgttgat putative branch site (score: 10)
tcttgtc putative PPT
tcattata TA-rich tract