1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cttcccgtttgaagtttagtgtgatgggctcctgtatgattttcatgcagactcaagttttcacacatcttgcttgttcttgacggttttcttttcgaagGTGGATTCATTTTCAAGGACAAACGTAGATTCAATTTGGGCAATCGGAGACGTGACAAACCGCATTAATTTGACCCCTGTTGCTCTCATGGAGGGTATGG
species | Physcomitrella patens |
transcript | PP1S13_127V6.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGAAGAAGTNGGAGTCAAGCTTGACAAAAGAGGAGCCATTGAG GTGGATTCATTTTCAAGGACAAACGTAGATTCAATTTGGGCAATCGGAGACEST: gi|162220508|gb|FC396045.1|FC396045
genomic: TGGAAGAAGTTGGAGTCAAGCTTGACAAAAGAGGAGCCATTGAGgtgcttattc ... cttttcgaagGTGGATTCATTTTCAAGGACAAACGTAGATTCAATTTGGGCAATCGGAGAC
EST: GAGTCAAGCTTGACAAAAGAGGAGCCATTGAG GTGGATTCATTTTCAAGGACAAACGTAGATTCAATTTGGGCAATGGGAGACEST: gi|162220509|gb|FC396046.1|FC396046
genomic: GAGTCAAGCTTGACAAAAGAGGAGCCATTGAGgtgcttattc ... cttttcgaagGTGGATTCATTTTCAAGGACAAACGTAGATTCAATTTGGGCAATCGGAGAC
EST: TAGGTTTGGAAGAAGTTGGAGTCAAGCTTGACAAAAGAGGAGCCATTGAG GTGGATTCATTTTCAAGGACAAACGTAGATTCAATTTGGGCAATCGGAGACEST: gi|37843971|gb|BJ601979.1|BJ601979
genomic: TAGGTTTGGAAGAAGTTGGAGTCAAGCTTGACAAAAGAGGAGCCATTGAGgtgcttattc ... cttttcgaagGTGGATTCATTTTCAAGGACAAACGTAGATTCAATTTGGGCAATCGGAGAC
EST: TAGGTTTGGAAGAAGTNGGAGTCAAGCTTGACAAAAGAGGAGCCATTGAG GTGGATTCATTTTCAAGGACAAACGTAGATTCAATTTGGGCAATCGGAGACEST: gi|37827821|gb|BJ585833.1|BJ585833
genomic: TAGGTTTGGAAGAAGTTGGAGTCAAGCTTGACAAAAGAGGAGCCATTGAGgtgcttattc ... cttttcgaagGTGGATTCATTTTCAAGGACAAACGTAGATTCAATTTGGGCAATCGGAGAC
EST: TAGGTTNGGAAGAAGTNGGAGTCAAGCTTGACAAAAGAGGAGCCATTGAG GTGGATTCATTTTCAAGGACAAACGTAGATTCAATTTGGGCAATCGGAGACEST: gi|162256496|gb|FC432527.1|FC432527
genomic: TAGGTTTGGAAGAAGTTGGAGTCAAGCTTGACAAAAGAGGAGCCATTGAGgtgcttattc ... cttttcgaagGTGGATTCATTTTCAAGGACAAACGTAGATTCAATTTGGGCAATCGGAGAC
EST: TAGGTTTGGAAGAAGTTGGAGTCAAGCTTGACAAAAGAGGAGCCATTGAG GTGGATTCATTTTCAAGGACAAACGTAGATTCAATTTGGGCAATCGGAGACEST: gi|67697363|gb|BJ957596.1|BJ957596
genomic: TAGGTTTGGAAGAAGTTGGAGTCAAGCTTGACAAAAGAGGAGCCATTGAGgtgcttattc ... cttttcgaagGTGGATTCATTTTCAAGGACAAACGTAGATTCAATTTGGGCAATCGGAGAC
EST: TAGGTTTGGAAGAAGTTGGAGTCAAGCTTGACAAAAGAGGAGCCATTGAG GTGGATTCATTTTCAAGGACAAACGTAGATTCAATTTGGGCAATCGGAGACEST: gi|208392896|gb|DC928582.1|DC928582
genomic: TAGGTTTGGAAGAAGTTGGAGTCAAGCTTGACAAAAGAGGAGCCATTGAGgtgcttattc ... cttttcgaagGTGGATTCATTTTCAAGGACAAACGTAGATTCAATTTGGGCAATCGGAGAC
EST: AAGTTGGAGTCAAGCTTGACAAAAGAGGAGCCATTGAG GTGGATTCATTTTCAAGGACAAACGTAGATTCAATTTGGGCAATCGGAGACEST: gi|37852204|gb|BJ610212.1|BJ610212
genomic: AAGTTGGAGTCAAGCTTGACAAAAGAGGAGCCATTGAGgtgcttattc ... cttttcgaagGTGGATTCATTTTCAAGGACAAACGTAGATTCAATTTGGGCAATCGGAGAC
EST: GGAAGAAGTTGGAGTCAAGCTTGACAAAAGAGGAGCCATTGAG GTGGATTCATTTTCAAGGACAAACGTAGATTCAATTTGGGCAATCGGAGAC
genomic: GGAAGAAGTTGGAGTCAAGCTTGACAAAAGAGGAGCCATTGAGgtgcttattc ... cttttcgaagGTGGATTCATTTTCAAGGACAAACGTAGATTCAATTTGGGCAATCGGAGAC
tgcagactcaagttttcacacatcttgcttgttcttgacggttttcttttcgaagGTGGATTCATTTTCAAGGACAAACGTAGATTCAATTTGGGCAATCGGAGACGTGACAAACCGCATTAATTTGACCCCTGTTGCTCTCATGGAGGGTATGG
tcttgac putative branch site (score: 19)
ttttcttttc putative PPT
ttttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttcccgtttgaagtttagtgtgatgggctcctgtatgattttcatgcagactcaagttttcacacatcttgcttgttcttgacggttttcttttcgaagGTGGATTCATTTTCAAGGACAAACGTAGATTCAATTTGGGCAATCGGAGACGTGACAAACCGCATTAATTTGACCCCTGTTGCTCTCATGGAGGGTATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG