1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatatgctttctctatctttgattctaaggatagagtacgtctgttttacggctttcaacattcattgttgttcttggttagtcttctaggtaggaagtactgcgttctaaagggttgtgaaatgcgttcttggaacaaataagtgccgcagtggttcatactgagcactgacgacttatgttttgtagGGCTCACCATCTGCGTTGGTGGTTAAGTGGGCCGACACTGAGAAAGAAAGGCAGGCGCGTAAAGTGCAGAAGGCTCAATCAGTTTCTTCCCCTCCTATAC
species | Physcomitrella patens |
transcript | PP1S12_239V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AACAAGCTATTGCTGCTATTGAAGCTCTTAATGGAGTCCACAGAATGGAG GGCTCACCATCTGCGTTGGTGGTTAAGTGGGCCGEST: gi|18373005|gb|BJ204607.1|BJ204607
genomic: AACAAGCTATTGCTGCTATTGAAGCTCTTAATGGAGTCCACAGAATGGAGgtatatgctt ... tgttttgtagGGCTCACCATCTGCGTTGGTGGTTAAGTGGGCCG
EST: AACAAGCTATTGCTGCTATTGAAGCTCTTAATGGAGTCCACAGAATGGAG GGCTCACCATCTGCGTTGGTGGGTTAAGTGGGCCGACACTGAGAAAGAAAGEST: gi|18361647|gb|BJ193713.1|BJ193713
genomic: AACAAGCTATTGCTGCTATTGAAGCTCTTAATGGAGTCCACAGAATGGAGgtatatgctt ... tgttttgtagGGCTCACCATCTGCGTTGGTGG-TTAAGTGGGCCGACACTGAGAAAGAAAG
EST: AACAAGCTATTGCTGCTATTGAAGCTCTTAATGGAGTCCACAGAATGGAG GGCTCACCATCTGCGTTGGTGGTTAAGTGGGCCGACACTGAGAAAGAAAGGEST: gi|162270407|gb|FC447107.1|FC447107
genomic: AACAAGCTATTGCTGCTATTGAAGCTCTTAATGGAGTCCACAGAATGGAGgtatatgctt ... tgttttgtagGGCTCACCATCTGCGTTGGTGGTTAAGTGGGCCGACACTGAGAAAGAAAGG
EST: CACAGAATGGAG GGCTCACCATCTGCGTTGGTGGTTAAGTGGGCCGACACTGAGAAAGAAAGGEST: gi|208353532|gb|DC938725.1|DC938725
genomic: CACAGAATGGAGgtatatgctt ... tgttttgtagGGCTCACCATCTGCGTTGGTGGTTAAGTGGGCCGACACTGAGAAAGAAAGG
EST: AACAAGCTATTGCTGCTATTGAAGCTCTTAATGGAGTCCACAGAATGGAG GGCTCACCATCTGCGTTGGTGGTTAAGTGGGCCGACACTGAGAAAGAAAGG
genomic: AACAAGCTATTGCTGCTATTGAAGCTCTTAATGGAGTCCACAGAATGGAGgtatatgctt ... tgttttgtagGGCTCACCATCTGCGTTGGTGGTTAAGTGGGCCGACACTGAGAAAGAAAGG
aacaaataagtgccgcagtggttcatactgagcactgacgacttatgttttgtagGGCTCACCATCTGCGTTGGTGGTTAAGTGGGCCGACACTGAGAAAGAAAGGCAGGCGCGTAAAGTGCAGAAGGCTCAATCAGTTTCTTCCCCTCCTATAC
cactgac putative branch site (score: 4)
ttatgtttt TA-rich tract