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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatatctagctaaatacccaccttaatcttttatctgctcgcactgtggaattgctaaattttctgacctggtctataatactgcgtgtattgactgcagAATGAACAATTCCACAAAATTTGTGAACTTTGCGGGTCTCCTGATGAGACTAATTGGCCTCGTGTGAGTCAGTTGCCTTACTACAATCAATTCAAATCTG

Basic information

species Physcomitrella patens
transcript PP1S121_162V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162159147|gb|FC334318.1|FC334318
EST:     TTTTTGCTGAGCTTCTTAATGGGAAACCCATCCTTCCCGGAAGGAACGAG                         AATGAACAATTCCACAAAATTTGTGAACTTTGCGGGTCTCCTGATGAGACT
genomic: TTTTTGCTGAGCTTCTTAATGGGAAACCCATCCTTCCCGGAAGGAACGAGgtgtgacttt ... ttgactgcagAATGAACAATTCCACAAAATTTGTGAACTTTGCGGGTCTCCTGATGAGACT
EST: gi|162171355|gb|FC347254.1|FC347254
EST:     TTTTTGCTGAGCTTCTTAATGGGAAACCCATCCTTCCCGGAAGGAACGAG                         AATGAACAATTCCACAAAATTTGTGAACTTTGCGGGTCTCCTGATGAGACT
genomic: TTTTTGCTGAGCTTCTTAATGGGAAACCCATCCTTCCCGGAAGGAACGAGgtgtgacttt ... ttgactgcagAATGAACAATTCCACAAAATTTGTGAACTTTGCGGGTCTCCTGATGAGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggaattgctaaattttctgacctggtctataatactgcgtgtattgactgcagAATGAACAATTCCACAAAATTTGTGAACTTTGCGGGTCTCCTGATGAGACTAATTGGCCTCGTGTGAGTCAGTTGCCTTACTACAATCAATTCAAATCTG
                                           tattgac  putative branch site (score: 2)
          taaattttct  TA-rich tract