1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagactactgatacctgctctagagatactgatactgctactgggtcccaatcccatgtctttcattttattattgctattattgtttacttaggtgttaggttctcacaaggcaaaccgctgttcagATCCCTGGTGTTCCAATAATGTTCATCTCGCAGCACCAATACTCGATTGAGAGGTTACCTGAAGCTACAATAGGAGGAG
species | Physcomitrella patens |
transcript | PP1S11_99V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTTACATTGTGGCCACGTGTGATCGAGACTTAAAGCGTCGCATTCGGAAG ATCCCTGGTGTTCCAATAATGTTCATCTCGCAGCACCAATACTCGATTGAGEST: gi|208384565|gb|DC907066.1|DC907066
genomic: GTTACATTGTGGCCACGTGTGATCGAGACTTAAAGCGTCGCATTCGGAAGgtgagactac ... cgctgttcagATCCCTGGTGTTCCAATAATGTTCATCTCGCAGCACCAATACTCGATTGAG
EST: GTTACATTGTGGCCACGTGTGATCGAGACTTAAAGCGTCGCATTCGGAAG ATCCCTGGTGT-CCAATAATGTTCATCTCGCAGCACCA-TACTCGATGGAGEST: gi|208348150|gb|DC920941.1|DC920941
genomic: GTTACATTGTGGCCACGTGTGATCGAGACTTAAAGCGTCGCATTCGGAAGgtgagactac ... cgctgttcagATCCCTGGTGTTCCAATAATGTTCATCTCGCAGCACCAATACTCGATTGAG
EST: GTTACATTGTGGCCACGTGTGATCGAGACTTAAAGCGTCGCATTCGGAAG ATCCCTGGTGTTCCAATAATGTTCATCTCGCAGCACCAATACTCGATTGAGEST: gi|208397157|gb|DC908171.1|DC908171
genomic: GTTACATTGTGGCCACGTGTGATCGAGACTTAAAGCGTCGCATTCGGAAGgtgagactac ... cgctgttcagATCCCTGGTGTTCCAATAATGTTCATCTCGCAGCACCAATACTCGATTGAG
EST: GTTACATTGTGGCCACGTGTGATCGAGACTTAAAGCGTCGCATTCGGAAG ATCCCTGGTGTTTCCAATAATGTTCATCTCGCAGCACCAATACTCGATTGA
genomic: GTTACATTGTGGCCACGTGTGATCGAGACTTAAAGCGTCGCATTCGGAAGgtgagactac ... cgctgttcagATCCCTGGTGTT-CCAATAATGTTCATCTCGCAGCACCAATACTCGATTGA
ttgctattattgtttacttaggtgttaggttctcacaaggcaaaccgctgttcagATCCCTGGTGTTCCAATAATGTTCATCTCGCAGCACCAATACTCGATTGAGAGGTTACCTGAAGCTACAATAGGAGGAG
ttctcac putative branch site (score: 2)
attattgtttactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagactactgatacctgctctagagatactgatactgctactgggtcccaatcccatgtctttcattttattattgctattattgtttacttaggtgttaggttctcacaaggcaaaccgctgttcagATCCCTGGTGTTCCAATAATGTTCATCTCGCAGCACCAATACTCGATTGAGAGGTTACCTGAAGCTACAATAGGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG