1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtctgactgtacttgcagactttgaatcgcaagaatcgctttcggtttgacggcctaatttaactaatttaacttagagaagctcaagatcatcccaatcaactaagtgatattctatattttccaactttcgctgcatcagcaaatgtcatggatatgtaaaatctgcgctctaacgatttattgggtttcttgaacagGCAGCAACTGACGACCAAGACAGCTTGCTTGGGTTTGATTTACGCAGCGATGGGAATGGGCATAA
species | Physcomitrella patens |
transcript | PP1S11_305V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGAGCGCTCCTGCTACAG GCAGCAACTGACGACCAAGACAGCTTGCTTGGGTTTGATTTACGCAGCGATEST: gi|162182342|gb|FC357213.1|FC357213
genomic: GGAGCGCTCCTGCTACAGgtctgactgt ... tcttgaacagGCAGCAACTGACGACCAAGACAGCTTGCTTGGGTTTGATTTACGCAGCGAT
EST: GGAGCGCTCNTGCTACAG GCAGCAACTGACGACCAAGACAGCTTGCTTGGGTTTGATTTACGCAGCGATEST: gi|208381871|gb|DC923786.1|DC923786
genomic: GGAGCGCTCCTGCTACAGgtctgactgt ... tcttgaacagGCAGCAACTGACGACCAAGACAGCTTGCTTGGGTTTGATTTACGCAGCGAT
EST: GAGGAACGTGTATCCTATTTGGTGATGCTTNTGGAGCGCTCCTGNTACAG GCAGCAACTGACGACCAAGACAGCTTGCTTGGGTTTGATTTACGCAGCGAT
genomic: GAGGAACGTGTATCCTATTTGGTGATGCTTCTGGAGCGCTCCTGCTACAGgtctgactgt ... tcttgaacagGCAGCAACTGACGACCAAGACAGCTTGCTTGGGTTTGATTTACGCAGCGAT
atgtcatggatatgtaaaatctgcgctctaacgatttattgggtttcttgaacagGCAGCAACTGACGACCAAGACAGCTTGCTTGGGTTTGATTTACGCAGCGATGGGAATGGGCATAA
ctctaac putative branch site (score: 7)
tttctt putative PPT
atatgtaaaat TA-rich tract