1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gcatcgttctttgtattactgatggcattttctacgaatttccttttggccgtgttttctaattgcccatgctgaagcaaatggcgattaatggatgcagGGCAGTTCAAATATGGAGGCCATTCAGATCATTAAGAAATGTGGCGGAGCACTGAAGGATTCCTTTTTGGACGAGGG
species | Physcomitrella patens |
transcript | PP1S116_55V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACAAAGTACATTTTGCTAATCTTGCTGTTGATGCTGTACTTAGACTCAAG GGCAGTTCAAATATGGAGGCCATTCAGATCATTEST: gi|162184970|gb|FC362416.1|FC362416
genomic: ACAAAGTACATTTTGCTAATCTTGCTGTTGATGCTGTACTTAGACTCAAGgtacatactc ... atggatgcagGGCAGTTCAAATATGGAGGCCATTCAGATCATT
EST: ACAAAGTACATTTTGCTAATCTTGCTGTTGATGCTGTACTTAGACTCAAG GGCAGATCAAATATGGAGGCCATTCAGATCATTAAAAAATGTGGCGGAGCAEST: gi|208365322|gb|DC931204.1|DC931204
genomic: ACAAAGTACATTTTGCTAATCTTGCTGTTGATGCTGTACTTAGACTCAAGgtacatactc ... atggatgcagGGCAGTTCAAATATGGAGGCCATTCAGATCATTAAGAAATGTGGCGGAGCA
EST: ACAAAGTACATTTTGCTAATCTTGCTGTTGATGCTGTACTTANACTCAAG GGCAGTTCAAATATGGAGGCCATTCAGATCATTAAGAAATGTGGCGGAGCAEST: gi|162249884|gb|FC425685.1|FC425685
genomic: ACAAAGTACATTTTGCTAATCTTGCTGTTGATGCTGTACTTAGACTCAAGgtacatactc ... atggatgcagGGCAGTTCAAATATGGAGGCCATTCAGATCATTAAGAAATGTGGCGGAGCA
EST: TGCTGTTGATGCTGTACTTAGACTCAAG GGCAGTTCAAATATGGAGGCCATTCAGATCATTAAGAAATGTGGCGGAGCA
genomic: TGCTGTTGATGCTGTACTTAGACTCAAGgtacatactc ... atggatgcagGGCAGTTCAAATATGGAGGCCATTCAGATCATTAAGAAATGTGGCGGAGCA
ttggccgtgttttctaattgcccatgctgaagcaaatggcgattaatggatgcagGGCAGTTCAAATATGGAGGCCATTCAGATCATTAAGAAATGTGGCGGAGCACTGAAGGATTCCTTTTTGGACGAGGG
ttttctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatcgttctttgtattactgatggcattttctacgaatttccttttggccgtgttttctaattgcccatgctgaagcaaatggcgattaatggatgcagGGCAGTTCAAATATGGAGGCCATTCAGATCATTAAGAAATGTGGCGGAGCACTGAAGGATTCCTTTTTGGACGAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgaa