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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacgcgtgcttccccgttgcaagttttggaatctcttggttgctgcccttggaaccagctttttagccccaatagactcaagaaagtaggaaccaatgaattcttaaagacgcttgcagtaacagctctccattgctacagTCCTGCATTTGTGGGCTGAACAGGTTTGAAAGCCCGTCGGTTCCTTGCTGGCTGTACTACCAAGTGTTGATTCTTTCCAATCAAAATCAATTCAGTCAGA

Basic information

species Physcomitrella patens
transcript PP1S113_85V6.5
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162223253|gb|FC400534.1|FC400534
EST:     CTTATTTGGAGTCTAAACATGCCGGCATTTTTCGATCGAATATTAGCAAG                         TCCTGCATTTGTGGGCTGAACAGGTTTGAAAGCCCGTCGGTTCCTTGCTGG
genomic: CTTATTTGGAGTCTAAACATGCCGGCATTTTTCGATCGAATATTAGCAAGgtaacgcgtg ... attgctacagTCCTGCATTTGTGGGCTGAACAGGTTTGAAAGCCCGTCGGTTCCTTGCTGG
EST: gi|162267220|gb|FC442632.1|FC442632
EST:     CTTATTTGGAGTCTAAACATGCCGGCATTTTTCGATCGAATATTAGCAAG                         TCCTGCATTTGTGGGCTGAACAGGTTTGAAAGCCCGTCGGTTCCTTGCTGG
genomic: CTTATTTGGAGTCTAAACATGCCGGCATTTTTCGATCGAATATTAGCAAGgtaacgcgtg ... attgctacagTCCTGCATTTGTGGGCTGAACAGGTTTGAAAGCCCGTCGGTTCCTTGCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggaaccaatgaattcttaaagacgcttgcagtaacagctctccattgctacagTCCTGCATTTGTGGGCTGAACAGGTTTGAAAGCCCGTCGGTTCCTTGCTGGCTGTACTACCAAGTGTTGATTCTTTCCAATCAAAATCAATTCAGTCAGA
                              cagtaac  putative branch site (score: 2)
                                       ctctccatt  putative PPT
        aatgaattcttaaa  TA-rich tract