1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttgacatggttttctaggttctcaaagttggtgagatattcatgtaggggctcactttgaaatgtatttgtctgaattcgtgtttacgtttgtccgcagGCCGTGGCATGATAGGTGATGCTGCGATAGAAGTGTCACGGAACTAATGAAAGGGGAGGCTTTTATTTGAGAAGCTTGGATGAGAAGGTGTAGTGTTACC
species | Physcomitrella patens |
transcript | PP1S102_135V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCTTCGATTCCCATGGAGGCATTCGGGAATTTAATATCAATCGGAG GCCGTGGCATGATAGGTGATGCTGCGATAGAAGTGTCACGGAACTAATGAAEST: gi|37824933|gb|BJ582999.1|BJ582999
genomic: GCTTCGATTCCCATGGAGGCATTCGGGAATTTAATATCAATCGGAGgttcatctct ... ttgtccgcagGCCGTGGCATGATAGGTGATGCTGCGATAGAAGTGTCACGGAACTAATGAA
EST: AGTAGCTTCGATTCCCATGGAGGCATTCGGGAATTTAATATCAATCGGAG GCCGTGGCATGATAGGTGATGCTGCGATAGAAGTGTCACGGAACTAATGAAEST: gi|162158445|gb|FC334240.1|FC334240
genomic: AGTAGCTTCGATTCCCATGGAGGCATTCGGGAATTTAATATCAATCGGAGgttcatctct ... ttgtccgcagGCCGTGGCATGATAGGTGATGCTGCGATAGAAGTGTCACGGAACTAATGAA
EST: AGTAGCTTCGATTCCCATGGAGGCATTCGGGAATTTAATATCAATCGGAG GCCGTGGCATGATAGGTGATGCTGCGATAGAAGTGTCACGGAACTAATGAAEST: gi|37851252|gb|BJ609260.1|BJ609260
genomic: AGTAGCTTCGATTCCCATGGAGGCATTCGGGAATTTAATATCAATCGGAGgttcatctct ... ttgtccgcagGCCGTGGCATGATAGGTGATGCTGCGATAGAAGTGTCACGGAACTAATGAA
EST: AGTAGCTTCGATTCCCATGGAGGCATTCGGGAATTTAATATCAATCGGAG GCCGTGGCATGATAGGTGATGCTGCGATAGAAGTGTCACGGAACTAATGAAEST: gi|37828013|gb|BJ586025.1|BJ586025
genomic: AGTAGCTTCGATTCCCATGGAGGCATTCGGGAATTTAATATCAATCGGAGgttcatctct ... ttgtccgcagGCCGTGGCATGATAGGTGATGCTGCGATAGAAGTGTCACGGAACTAATGAA
EST: GGAGGCATTCGGGAATTTAATATCAATCGGAG GCCGTGGCATGATAGGTGATGCTGCGATAGAAGTGTCACGGAACTAATGAAEST: gi|37828778|gb|BJ586790.1|BJ586790
genomic: GGAGGCATTCGGGAATTTAATATCAATCGGAGgttcatctct ... ttgtccgcagGCCGTGGCATGATAGGTGATGCTGCGATAGAAGTGTCACGGAACTAATGAA
EST: AGTAGCTTCGATTCCCATGGAGGCATTCGGGAATTTAATATCAATCGGAG GCCGTGGCATGATAGGTGATGCTGCGATAGAAGTGTCACGGAACTAATGAA
genomic: AGTAGCTTCGATTCCCATGGAGGCATTCGGGAATTTAATATCAATCGGAGgttcatctct ... ttgtccgcagGCCGTGGCATGATAGGTGATGCTGCGATAGAAGTGTCACGGAACTAATGAA
taggggctcactttgaaatgtatttgtctgaattcgtgtttacgtttgtccgcagGCCGTGGCATGATAGGTGATGCTGCGATAGAAGTGTCACGGAACTAATGAAAGGGGAGGCTTTTATTTGAGAAGCTTGGATGAGAAGGTGTAGTGTTACC
ggctcac putative branch site (score: 1)
tttgtcc putative PPT
tttgaaatgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgacatggttttctaggttctcaaagttggtgagatattcatgtaggggctcactttgaaatgtatttgtctgaattcgtgtttacgtttgtccgcagGCCGTGGCATGATAGGTGATGCTGCGATAGAAGTGTCACGGAACTAATGAAAGGGGAGGCTTTTATTTGAGAAGCTTGGATGAGAAGGTGTAGTGTTACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC