1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tctgcatggcaatttgttgaatgtaatagatttgcaccaatgaatgcattctcaagttaatacctgaagttaaatgcccaaagcttgtgtttgcctccagATTCTGTTACGAGGAAGGATGCACCAAAGAGGATCCTTTGTCGCAAGAAACCATTCGTAAACTTGCGGATCCTCTGCCATTTGCGAAGCATATTCACAGC
species | Physcomitrella patens |
transcript | PP1S101_201V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCCCTGCTCAATATCCATCTCCAGGCTGGACTTTCGGCGCTCAAAACGCC ATTCTGTTACGAGGAAGGATGCACCAAAGAGGATCCTTTGTCGCAAGAAACEST: gi|208368556|gb|DC947915.1|DC947915
genomic: CCCCTGCTCAATATCCATCTCCAGGCTGGACTTTCGGCGCTCAAAACGCCgtatttaaca ... ttgcctccagATTCTGTTACGAGGAAGGATGCACCAAAGAGGATCCTTTGTCGCAAGAAAC
EST: CCCCTGCTCAATATCCATCTCCAGGCTGGACTTTCGGCGCTCAAAACGCC ATTCTGTTACGAGGAAGGATGCACCAAAGAGGATCCTTTGTCGCAAGAAACEST: gi|208366321|gb|DC947551.1|DC947551
genomic: CCCCTGCTCAATATCCATCTCCAGGCTGGACTTTCGGCGCTCAAAACGCCgtatttaaca ... ttgcctccagATTCTGTTACGAGGAAGGATGCACCAAAGAGGATCCTTTGTCGCAAGAAAC
EST: CCCCTGCTCAATATCCATCTCCAGGCTGGACTTTCGGCGCTCAAAACGCC ATTCTGTTACGAGGAAGGATGCACCAAAGAGGATCCTTTGTCGCAAGAAACEST: gi|15326950|gb|BI487373.1|BI487373
genomic: CCCCTGCTCAATATCCATCTCCAGGCTGGACTTTCGGCGCTCAAAACGCCgtatttaaca ... ttgcctccagATTCTGTTACGAGGAAGGATGCACCAAAGAGGATCCTTTGTCGCAAGAAAC
EST: GCTGGACTTTCGGCGCTCAAAACGCC ATTCTGTTACGAGGAAGGATGCACCAAAGAGGATCCTTTGTCGCAAGAAACEST: gi|67694865|gb|BJ955098.1|BJ955098
genomic: GCTGGACTTTCGGCGCTCAAAACGCCgtatttaaca ... ttgcctccagATTCTGTTACGAGGAAGGATGCACCAAAGAGGATCCTTTGTCGCAAGAAAC
EST: CCCTGCTCAATATCCATCTCCAGGGCTGGACTTTCGGCGCTCAAAACGCC ATTCTGTTACGAGGAAGGATGCACCAAAGAGGATCCTTTGTCGCAAGAAAC
genomic: CCCTGCTCAATATCCATCTCCA-GGCTGGACTTTCGGCGCTCAAAACGCCgtatttaaca ... ttgcctccagATTCTGTTACGAGGAAGGATGCACCAAAGAGGATCCTTTGTCGCAAGAAAC
gcattctcaagttaatacctgaagttaaatgcccaaagcttgtgtttgcctccagATTCTGTTACGAGGAAGGATGCACCAAAGAGGATCCTTTGTCGCAAGAAACCATTCGTAAACTTGCGGATCCTCTGCCATTTGCGAAGCATATTCACAGC
agttaat putative branch site (score: 7)
tttgcctcc putative PPT
aagttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgcatggcaatttgttgaatgtaatagatttgcaccaatgaatgcattctcaagttaatacctgaagttaaatgcccaaagcttgtgtttgcctccagATTCTGTTACGAGGAAGGATGCACCAAAGAGGATCCTTTGTCGCAAGAAACCATTCGTAAACTTGCGGATCCTCTGCCATTTGCGAAGCATATTCACAGC
- - - - - - - tgttgaa