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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaattttccctgtccagttgcaggccctggttatcaataattattgttattattacactaattatcatcatcaccatcatcaagagatgtttcttaattcagtccctgatactgattgtgtgacattgttctccacttaatctcactgccccacagATTAAAGTTATGACTACCTTGGGATGGGACAAGGCCTTTTCCAAACGCCATTTTGACCTATTCTCACCTCCAGATTTCTTCACTAGG

Basic information

species Physcomitrella patens
transcript PP1S101_171V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162193311|gb|FC368862.1|FC368862
EST:     GTGTGCCTTTCAACCCCACATCACCCAGAAACACAACCCTAATTCTCAAG                         ATTAAAGTTATGACTACCTTGGGATGGGACAAGGCCT
genomic: GTGTGCCTTTCAACCCCACATCACCCAGAAACACAACCCTAATTCTCAAGgtgaattttc ... tgccccacagATTAAAGTTATGACTACCTTGGGATGGGACAAGGCCT
EST: gi|37845396|gb|BJ603404.1|BJ603404
EST:     ACCCAGAAACACAACCTTAATTCTCAAG                         ATTAAAGTTATGACTACCTTGGGATGGGACAAGGCCTTTTCCAAACGCCAT
genomic: ACCCAGAAACACAACCCTAATTCTCAAGgtgaattttc ... tgccccacagATTAAAGTTATGACTACCTTGGGATGGGACAAGGCCTTTTCCAAACGCCAT
EST: gi|162193310|gb|FC368861.1|FC368861
EST:     TGTGCCTTTCAACCCCACATCACCCAGAAACACAACCCTAATTCTCAAG                         ATTAAAGTTATGACTACCTTGGGATGGGACAAGGCCTTTTCCAAACGCCAT
genomic: TGTGCCTTTCAACCCCACATCACCCAGAAACACAACCCTAATTCTCAAGgtgaattttc ... tgccccacagATTAAAGTTATGACTACCTTGGGATGGGACAAGGCCTTTTCCAAACGCCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtccctgatactgattgtgtgacattgttctccacttaatctcactgccccacagATTAAAGTTATGACTACCTTGGGATGGGACAAGGCCTTTTCCAAACGCCATTTTGACCTATTCTCACCTCCAGATTTCTTCACTAGG
                                       tctcact  CT-rich tract
                                 acttaat  TA-rich tract