1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aggatgaatgtgcctctaaaatatgattagtcatctgattttgttgtggaaatgccagaacatgttccttattcaattattgtttattgactttgaacagGGGAGATTTGGTAGATACGTATAGACATCTCCACAAACAACAGGATTTTGATGCTGGCTTCACATGGTCTGGAAATCCTGTTGGAAA
species | Physcomitrella patens |
transcript | PP1S101_153V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCAGGCTTCACACTTGGGGAGCGTCAACGTTTTGCTGAATGTCTATCGAA GGGAGATTTGGTAGATACGTATAGACATCTCCACAAACAACAGGATTTTGAEST: gi|37841815|gb|BJ599823.1|BJ599823
genomic: CCAGGCTTCACACTTGGGGAGCGTCAACGTTTTGCTGAATGTCTATCGAAgtgcgtattc ... ctttgaacagGGGAGATTTGGTAGATACGTATAGACATCTCCACAAACAACAGGATTTTGA
EST: CCAGGCTTCACACTTGGGGAGCGTCAACGTTTTGCTGAATGTCTATCGAA GGGAGATTTGGTAGATACGTATAGACATCTCCACAAACAACAGGATTTTGA
genomic: CCAGGCTTCACACTTGGGGAGCGTCAACGTTTTGCTGAATGTCTATCGAAgtgcgtattc ... ctttgaacagGGGAGATTTGGTAGATACGTATAGACATCTCCACAAACAACAGGATTTTGA
gtggaaatgccagaacatgttccttattcaattattgtttattgactttgaacagGGGAGATTTGGTAGATACGTATAGACATCTCCACAAACAACAGGATTTTGATGCTGGCTTCACATGGTCTGGAAATCCTGTTGGAAA
tattgac putative branch site (score: 6)
ttattcaattattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggatgaatgtgcctctaaaatatgattagtcatctgattttgttgtggaaatgccagaacatgttccttattcaattattgtttattgactttgaacagGGGAGATTTGGTAGATACGTATAGACATCTCCACAAACAACAGGATTTTGATGCTGGCTTCACATGGTCTGGAAATCCTGTTGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG