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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcataacatgcaattaatagagtttagtcgaatacttaagagaaagaggtaattttattgtaccattatggtctcatcagtattggggtattggagcagGTAACAACTGAAATGAAGATACACAGTACACTTTACGATGTCAAAGGCGCCAAAAATAGCACAGCATTTACTCCCGACTTTGATGCGGTCACCTTTCATG

Basic information

species Physcomitrella patens
transcript PP1S100_63V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208362071|gb|DC950506.1|DC950506
EST:     ATGATGAGCACTTCGTTGCTTTCGGCAATCTCAATATTCAAGATATGGAG                         GTAACAACTGAAATGAAGATACACAGTACACTTTACGATGTCAAAGGCGCC
genomic: ATGATGAGCACTTCATTGCTTTCGGCAATCTCAATATTCAAGATATGGAGgttttccctg ... attggagcagGTAACAACTGAAATGAAGATACACAGTACACTTTACGATGTCAAAGGCGCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaggtaattttattgtaccattatggtctcatcagtattggggtattggagcagGTAACAACTGAAATGAAGATACACAGTACACTTTACGATGTCAAAGGCGCCAAAAATAGCACAGCATTTACTCCCGACTTTGATGCGGTCACCTTTCATG
     taattttattgta  TA-rich tract