1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tctatttatgttcagtttaatcttgcacatggccttattgtagagtattgcaatgttgtgttgcattttcatgctcattagttttctcttttctcttcagAAACGTTAAGGAATAGGGCTAACATACTGCAAAAGCTGAAGAATCAAATTTCTCGAGGAATACCTATCATAGGTGCTGGGGCTGGTACTGGAATTTCTGC
species | Physcomitrella patens |
transcript | PP1S9_334V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAAGCCAAAACTCATCAGGAGCCCAACTGATTTTTCACGAGCTAAACCAG AAACGTTAAGGAATAGGGCTAACATACTGCAAAAGCTGAAGAATCAAATTTEST: gi|162184284|gb|FC360512.1|FC360512
genomic: AAAGCCAAAACTCATCAGGAGCCCAACTGATTTTTCACGAGCTAAACCAGgtcttctatt ... ttctcttcagAAACGTTAAGGAATAGGGCTAACATACTGCAAAAGCTGAAGAATCAAATTT
EST: AAAGCCAAAACTCATCAGGAGCCCAACTGATTTTTCACGAGCTAAACCAG AAACGTTAAGGAATAGGGCTAACATACTGCAAAAGCTGAAGAATCAAATTT
genomic: AAAGCCAAAACTCATCAGGAGCCCAACTGATTTTTCACGAGCTAAACCAGgtcttctatt ... ttctcttcagAAACGTTAAGGAATAGGGCTAACATACTGCAAAAGCTGAAGAATCAAATTT
tattgcaatgttgtgttgcattttcatgctcattagttttctcttttctcttcagAAACGTTAAGGAATAGGGCTAACATACTGCAAAAGCTGAAGAATCAAATTTCTCGAGGAATACCTATCATAGGTGCTGGGGCTGGTACTGGAATTTCTGC
tgctcattagttttct CT-rich tract
attagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctatttatgttcagtttaatcttgcacatggccttattgtagagtattgcaatgttgtgttgcattttcatgctcattagttttctcttttctcttcagAAACGTTAAGGAATAGGGCTAACATACTGCAAAAGCTGAAGAATCAAATTTCTCGAGGAATACCTATCATAGGTGCTGGGGCTGGTACTGGAATTTCTGC
- - - - - - - - - - - - -cacatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgca