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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaacggtcaaaggagatcttgtttaattttcgtttttttcggtttatggatttacagaaacctgcgaccttagtattctaacggcccttttcgctgtcagTGCTGGGACAAATACCTACTGAAGAATTTAAAGAACGCTGCGAATGAGAAAGAACACCCAGAATGGGGCGTGGGGCCAGCAGACGCAGGCGATTACAACT

Basic information

species Physcomitrella patens
transcript PP1S9_318V6.5
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162237715|gb|FC413330.1|FC413330
EST:     CCTACCCAGAAACTCAAGGCTGGAAATATCCAGGAACGGGTGAATTTCAG                         TGCTGGGACAAATACCTACTGAAGAATTTAAAGAACGCTGCGAATGAGAAA
genomic: CCTACCCAGAAACTCAAGGCTGGAAATATCCAGGAACGGGTGAATTTCAGgttcagcaaa ... tcgctgtcagTGCTGGGACAAATACCTACTGAAGAATTTAAAGAACGCTGCGAATGAGAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggatttacagaaacctgcgaccttagtattctaacggcccttttcgctgtcagTGCTGGGACAAATACCTACTGAAGAATTTAAAGAACGCTGCGAATGAGAAAGAACACCCAGAATGGGGCGTGGGGCCAGCAGACGCAGGCGATTACAACT
                              ttctaac  putative branch site (score: 1)
                                       cccttttcgctgtc  putative PPT
                        ttagtatt  TA-rich tract