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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcatctaacgtgctcctccttcgaaaatgttcaaatttctaagtaatttacttaatcttgccaatgatgaaaagtaattttttttccgtttttgatttcctagTACAAAGTCAACATCAAGACAGGCGACGCAGAGCTTGACACTCAGAACCCTGGAAATATCTCCGACTGGCTATGTGACGGCAACTCTGTGGTTCGAGGTG

Basic information

species Physcomitrella patens
transcript PP1S9_317V6.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162160171|gb|FC337068.1|FC337068
EST:     ATGAGATTCTATTTTGCATGAACATCAGAGACCCTTCCGATTTTGATGTG                         TACAAAGTGAACATCAAGACAGGCGACGCAGAGCTTGACACTCAGAACCCT
genomic: ATGAGATTCTATTTTGCATGAACATCAGAGACCCTTCCGATTTTGATGTGgtaagtcatc ... gatttcctagTACAAAGTCAACATCAAGACAGGCGACGCAGAGCTTGACACTCAGAACCCT
EST: gi|162252662|gb|FC428699.1|FC428699
EST:     ATGAGATTCTATTTTGCATGAACATCAGAGACCCTTCCGATTTTGATGTG                         TACAAAGTGAACATCAAGACAGGCGACGCAGAGCTTGACACTCAGAACCCT
genomic: ATGAGATTCTATTTTGCATGAACATCAGAGACCCTTCCGATTTTGATGTGgtaagtcatc ... gatttcctagTACAAAGTCAACATCAAGACAGGCGACGCAGAGCTTGACACTCAGAACCCT
EST: gi|162178385|gb|FC355207.1|FC355207
EST:     ATGAGATTCTATTTTGCATGAACATCAGAGACCCTTCCGATTTTGATGTG                         TACAAAGTGAACATCAAGACAGGCGACGCAGAGCTTGACACTCAGAACCCT
genomic: ATGAGATTCTATTTTGCATGAACATCAGAGACCCTTCCGATTTTGATGTGgtaagtcatc ... gatttcctagTACAAAGTCAACATCAAGACAGGCGACGCAGAGCTTGACACTCAGAACCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttaatcttgccaatgatgaaaagtaattttttttccgtttttgatttcctagTACAAAGTCAACATCAAGACAGGCGACGCAGAGCTTGACACTCAGAACCCTGGAAATATCTCCGACTGGCTATGTGACGGCAACTCTGTGGTTCGAGGTG
                                         ttttgat  putative branch site (score: 4)
                             ttttttttccgttttt  CT-rich tract
              aatgatgaaaagtaat  TA-rich tract