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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttatgatgcacccaatcgaacgggatcagtccgtgtcgtcatacaggttacttcttctgcatcaattttttctgctgatattgcactgtttcctggcagGTTTGTTTCGAATAAATGGCTTGGTGCTCTGGTATTCAGTGGAATATGTTTAGGAAAACTTGTCGTTTAATCTTACTACAACTTGTGACAAACTATATAC

Basic information

species Physcomitrella patens
transcript PP1S98_5V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37851808|gb|BJ609816.1|BJ609816
EST:     TGGCAAATCTCCACTGTTGACACTCAAAGTCGAGCTGACTGCAATGACAA                         GTTTGTTTCGAATAAATGGCTTGGTGCTCTGGTATTCAGTGGAATATGTTT
genomic: TGGCAAATCTCCACTGTTGACACTCAAAGTCGAGCTGACTGCAATGACAAgtaagtctgt ... ttcctggcagGTTTGTTTCGAATAAATGGCTTGGTGCTCTGGTATTCAGTGGAATATGTTT
EST: gi|37841675|gb|BJ599683.1|BJ599683
EST:     TGGCAAATCTCCACTGTTGACACTCAAAGTCGAGCTGACTGCAATGACAA                         GTTTGTTTCGAATAAATGGCTTGGTGCTCTGGTATTCAGTGGAATATGTTT
genomic: TGGCAAATCTCCACTGTTGACACTCAAAGTCGAGCTGACTGCAATGACAAgtaagtctgt ... ttcctggcagGTTTGTTTCGAATAAATGGCTTGGTGCTCTGGTATTCAGTGGAATATGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggttacttcttctgcatcaattttttctgctgatattgcactgtttcctggcagGTTTGTTTCGAATAAATGGCTTGGTGCTCTGGTATTCAGTGGAATATGTTTAGGAAAACTTGTCGTTTAATCTTACTACAACTTGTGACAAACTATATAC
                            tgctgat  putative branch site (score: 3)
                                         ctgtttcct  putative PPT
                atcaatttttt  TA-rich tract