1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tatatggtgtagtttgaccttcaacgattcagatacgtgcatgatacaaaagagttctatatttacccagtctcaattgttgatcctcctacatggtcagGTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTTGAGTTCAAGAAGATAGGCAGAACTATTAA
species | Physcomitrella patens |
transcript | PP1S90_139V6.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAG GTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTTEST: gi|162163706|gb|FC339785.1|FC339785
genomic: AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAGgtaggccatc ... acatggtcagGTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTT
EST: AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAG GTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTTEST: gi|162209803|gb|FC385737.1|FC385737
genomic: AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAGgtaggccatc ... acatggtcagGTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTT
EST: AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAG GTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTTEST: gi|67698886|gb|BJ959119.1|BJ959119
genomic: AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAGgtaggccatc ... acatggtcagGTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTT
EST: AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAG GTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTTEST: gi|100378011|gb|BY949635.1|BY949635
genomic: AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAGgtaggccatc ... acatggtcagGTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTT
EST: GACCTTTTANTTGTG-TAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAG GTCACGAAGGAATCTCTTGATEST: gi|100361031|gb|BY946879.1|BY946879
genomic: GACCTTTTA-TTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAGgtaggccatc ... acatggtcagGTCACGAAGGAATCTCTTGAT
EST: AGACCTTTTATTGTG-TAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAG GTCACGAAGGAATCEST: gi|37828378|gb|BJ586390.1|BJ586390
genomic: AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAGgtaggccatc ... acatggtcagGTCACGAAGGAATC
EST: AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAG GTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTTEST: gi|208381832|gb|DC923761.1|DC923761
genomic: AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAGgtaggccatc ... acatggtcagGTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTT
EST: AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAG GTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTTEST: gi|37848383|gb|BJ606391.1|BJ606391
genomic: AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAGgtaggccatc ... acatggtcagGTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTT
EST: AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAG GTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTT
genomic: AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAGgtaggccatc ... acatggtcagGTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTT
acaaaagagttctatatttacccagtctcaattgttgatcctcctacatggtcagGTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTTGAGTTCAAGAAGATAGGCAGAACTATTAA
tgttgat putative branch site (score: 4)
tcctcctac CT-rich tract
ttctatattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatggtgtagtttgaccttcaacgattcagatacgtgcatgatacaaaagagttctatatttacccagtctcaattgttgatcctcctacatggtcagGTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTTGAGTTCAAGAAGATAGGCAGAACTATTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG