1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgttttatttttattttctagactatatttggcgcttctggtatggctgctgattaggaattgcatgatgtttagtatggactttagctattatttattttctatgttgcttgtaccagGGCATTACAATGTGTTTGTGGGAGATCTCAGTCCGGAGGTGACCGATGCAACTTTGTTTGCTGCATTCTGTGTCTATCCAAGCTGCTC
species | Physcomitrella patens |
transcript | PP1S84_50V6.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TATCAAAGTTAATTGGGCATATGCAAGCGGGCAGAGAGAGGATACTACAG GGCATTACAATGTGTTTGTGGGAGATCTCAGTCCGGAGGTGACCGATGCAAEST: gi|162277159|gb|FC453381.1|FC453381
genomic: TATCAAAGTTAATTGGGCATATGCAAGCGGGCAGAGAGAGGATACTACAGgtgttttatt ... cttgtaccagGGCATTACAATGTGTTTGTGGGAGATCTCAGTCCGGAGGTGACCGATGCAA
EST: TATCAAAGTTAATTGGGCATATGCAAGCGGGCAGAGAGAGGATACTACAG GGCATTACAATGTGTTTGTGGGAGATCTCAGTCCGGAGGTGACCGATGCAAEST: gi|162152881|gb|FC328975.1|FC328975
genomic: TATCAAAGTTAATTGGGCATATGCAAGCGGGCAGAGAGAGGATACTACAGgtgttttatt ... cttgtaccagGGCATTACAATGTGTTTGTGGGAGATCTCAGTCCGGAGGTGACCGATGCAA
EST: TATCAAAGTTAATTGGGCATATGCAAGCGGGCAGAGAGAGGATACTACAG GGCATTACAATGTGTTTGTGGGAGATCTCAGTCCGGAGGTGACCGATGCAAEST: gi|162261365|gb|FC437798.1|FC437798
genomic: TATCAAAGTTAATTGGGCATATGCAAGCGGGCAGAGAGAGGATACTACAGgtgttttatt ... cttgtaccagGGCATTACAATGTGTTTGTGGGAGATCTCAGTCCGGAGGTGACCGATGCAA
EST: TATCAAAGTTAATTGGGCATATGCAAGCGGGCAGAGAGAGGATACTACAG GGCATTACAATGTGTTTGTGGGAGATCTCAGTCCGGAGGTGACCGATGCAAEST: gi|100377715|gb|BY986366.1|BY986366
genomic: TATCAAAGTTAATTGGGCATATGCAAGCGGGCAGAGAGAGGATACTACAGgtgttttatt ... cttgtaccagGGCATTACAATGTGTTTGTGGGAGATCTCAGTCCGGAGGTGACCGATGCAA
EST: TATCANAGTTAATTGGGCATATGCAAGCGGGCAGAGAGAGGATACTACAG GGCATTACAATGTGTTTGTGGGAGATCTCAGTCCCGGAG-TGACCGATGCA
genomic: TATCAAAGTTAATTGGGCATATGCAAGCGGGCAGAGAGAGGATACTACAGgtgttttatt ... cttgtaccagGGCATTACAATGTGTTTGTGGGAGATCTCAGTCC-GGAGGTGACCGATGCA
atgatgtttagtatggactttagctattatttattttctatgttgcttgtaccagGGCATTACAATGTGTTTGTGGGAGATCTCAGTCCGGAGGTGACCGATGCAACTTTGTTTGCTGCATTCTGTGTCTATCCAAGCTGCTC
tttagctattatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttttatttttattttctagactatatttggcgcttctggtatggctgctgattaggaattgcatgatgtttagtatggactttagctattatttattttctatgttgcttgtaccagGGCATTACAATGTGTTTGTGGGAGATCTCAGTCCGGAGGTGACCGATGCAACTTTGTTTGCTGCATTCTGTGTCTATCCAAGCTGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT