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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caagagtttcttacgttttcactattttcgatttgattaaataatataatacctgtagttcctgctaggctgaccttcctcatcaccttttgttgtgcagCTATGTTGACGAATTTGATATTGATACTCCAGATAATAATATTCACAAGCACATTCCATTTGCAATACTCCTGATCAAAATTGCAGAAGATTGGAAAAAG

Basic information

species Physcomitrella patens
transcript PP1S84_287V6.6
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162194825|gb|FC368968.1|FC368968
EST:     AACAGAGTGGAGGATCTTCGGCTTCACATACCTTGGCCTGAACTTCAAAG                         CTATGTTGACGAATTTGATATTGATACTCCAGATAATAATATTCACAAGCA
genomic: AACAGAGTGGAGGATCTTCGGCTTCACATACCTTGGCCTGAACTTCAAAGgtataaaatc ... tgttgtgcagCTATGTTGACGAATTTGATATTGATACTCCAGATAATAATATTCACAAGCA
EST: gi|100414265|gb|BY992692.1|BY992692
EST:     AACAGAGTGGAGGATCTTCGGCTTCACATACCTTGGCCTGAACTTCAAAG                         CTATGTTGACGAATTTGATATTGATACTCCAGATAATAATATTCACAAGCA
genomic: AACAGAGTGGAGGATCTTCGGCTTCACATACCTTGGCCTGAACTTCAAAGgtataaaatc ... tgttgtgcagCTATGTTGACGAATTTGATATTGATACTCCAGATAATAATATTCACAAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataatacctgtagttcctgctaggctgaccttcctcatcaccttttgttgtgcagCTATGTTGACGAATTTGATATTGATACTCCAGATAATAATATTCACAAGCACATTCCATTTGCAATACTCCTGATCAAAATTGCAGAAGATTGGAAAAAG
                      ggctgac  putative branch site (score: 3)
                            ccttcctcatcacctt  CT-rich tract
                                          ttttgtt  TA-rich tract