1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgcactccacttcgttctggaatatctttatcttttgtagagttattcatgcgtatcaagtcctgttttcgtctctgagtaattcgttcttcgtgtgtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTACGGCGCCATGGCTAGGGGAGATGCTGTCATATATCTCCGATTCCCACACT
species | Physcomitrella patens |
transcript | PP1S83_223V6.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTACEST: gi|162266758|gb|FC442274.1|FC442274
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTACEST: gi|37821284|gb|BJ579350.1|BJ579350
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTACEST: gi|208392973|gb|DC945995.1|DC945995
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTACEST: gi|162152132|gb|FC328722.1|FC328722
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: CTTAGGAATTTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAGEST: gi|18337776|gb|BJ169800.1|BJ169800
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTACEST: gi|162232988|gb|FC407875.1|FC407875
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTACEST: gi|162278960|gb|FC454699.1|FC454699
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTACEST: gi|208394076|gb|DC957157.1|DC957157
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTACEST: gi|37837828|gb|BJ595836.1|BJ595836
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTACEST: gi|208371461|gb|DC955797.1|DC955797
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTACEST: gi|162151616|gb|FC327745.1|FC327745
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTACEST: gi|208365825|gb|DC951060.1|DC951060
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTACEST: gi|67692840|gb|BJ953073.1|BJ953073
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTACEST: gi|162278961|gb|FC454700.1|FC454700
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTACEST: gi|162198268|gb|FC372607.1|FC372607
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
cgtatcaagtcctgttttcgtctctgagtaattcgttcttcgtgtgtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTACGGCGCCATGGCTAGGGGAGATGCTGTCATATATCTCCGATTCCCACACT
agtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcactccacttcgttctggaatatctttatcttttgtagagttattcatgcgtatcaagtcctgttttcgtctctgagtaattcgttcttcgtgtgtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTACGGCGCCATGGCTAGGGGAGATGCTGTCATATATCTCCGATTCCCACACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG