1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...gtgtcttgacgcctttgtggatcttattgctgcatgtatacgtgtgtactcagtatgctgcttagcaggtgatcttactctgcaattcgatatgtggcagATTGAAGGAGTCTTATCAAAAGCCGTGGATGAGCTTCGAACTCTACAAGAAGAGCGCAGG
species | Physcomitrella patens |
transcript | PP1S83_162V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGCTTGAGTTTGAGGTTCCGCCACAATCACAACGCGGGACACTCTCGACG ATTGAAGGAGTCTTATCAAAAGCCGTGGATGAGCTTCGAACTCTACAAGAAEST: gi|162240627|gb|FC419365.1|FC419365
genomic: AGCTTGAGTTTGAGGTTCCGCCACAATCACAACGCGGGACACTCTCGACGgttagttaac ... tatgtggcagATTGAAGGAGTCTTATCAAAAGCCGTGGATGAGCTTCGAACTCTACAAGAA
EST: AGCTTGAGTTTGAGGTTCCGCCACAATCACAACGCGGGACACTCTCGACG ATTGAAGGAGTCTTATCAAAAGCCGTGGATGAGCTTCGAACTCTACAAGAAEST: gi|18356123|gb|BJ188182.1|BJ188182
genomic: AGCTTGAGTTTGAGGTTCCGCCACAATCACAACGCGGGACACTCTCGACGgttagttaac ... tatgtggcagATTGAAGGAGTCTTATCAAAAGCCGTGGATGAGCTTCGAACTCTACAAGAA
EST: AGCTTGAGTTTGAGGTTCCGCCACAATCACAACGCGGGACACTCTCGACG ATTGAAGGAGTCTTATCAAAAEST: gi|162150536|gb|FC326392.1|FC326392
genomic: AGCTTGAGTTTGAGGTTCCGCCACAATCACAACGCGGGACACTCTCGACGgttagttaac ... tatgtggcagATTGAAGGAGTCTTATCAAAA
EST: AGCTTGAGTTTGAGGTTCCGCCACAATCACAACGCGGGACACTCTCGACG ATTGAAGGAGTCTTATCAAAAGCCGTGGATGAGCTTCGAACTCTACAAGAAEST: gi|18345693|gb|BJ177736.1|BJ177736
genomic: AGCTTGAGTTTGAGGTTCCGCCACAATCACAACGCGGGACACTCTCGACGgttagttaac ... tatgtggcagATTGAAGGAGTCTTATCAAAAGCCGTGGATGAGCTTCGAACTCTACAAGAA
EST: AGCTTGAGTTTGAGGTTCCGCCACAATCACAACGCGGGACACTCTCGACG ATTGAAGGAGTCTTATCAAAAGCCGTGGATGAGCTTCGAACTCTACAAGAA
genomic: AGCTTGAGTTTGAGGTTCCGCCACAATCACAACGCGGGACACTCTCGACGgttagttaac ... tatgtggcagATTGAAGGAGTCTTATCAAAAGCCGTGGATGAGCTTCGAACTCTACAAGAA
gtactcagtatgctgcttagcaggtgatcttactctgcaattcgatatgtggcagATTGAAGGAGTCTTATCAAAAGCCGTGGATGAGCTTCGAACTCTACAAGAAGAGCGCAGG
atcttac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtcttgacgcctttgtggatcttattgctgcatgtatacgtgtgtactcagtatgctgcttagcaggtgatcttactctgcaattcgatatgtggcagATTGAAGGAGTCTTATCAAAAGCCGTGGATGAGCTTCGAACTCTACAAGAAGAGCGCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - -tgctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgct