1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atgtatcgttcttgcctggcctctttgtgtgcttctggttttaggccttgtagatggcccacgcttgctcagtcaatacctgagttgtctgtttttacagATAGTTAATCTGATAACAAGGGAGCTGGGAGATCATCCAAAAGTTTTCATTTGGGATGGGAGAG
species | Physcomitrella patens |
transcript | PP1S82_141V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCGGAGAACTCNTACTCAA ATAGTTAATCTGATAACAAGGGAGCTGGGAGATCATCCAAAAGTTCTCATTEST: gi|162181961|gb|FC356832.1|FC356832
genomic: CCGGAGAACTCCTACTCAAgtacagttct ... gtttttacagATAGTTAATCTGATAACAAGGGAGCTGGGAGATCATCCAAAAGTTTTCATT
EST: CACTTGTGGAAGTTGTCGTATGACATTTTCCCGGAGAACTCCTACTNCAA -TAGTTAATCTGATAACAAGGGAGCTEST: gi|67694505|gb|BJ954738.1|BJ954738
genomic: CACTTGTGGAAGTTGTCGTATGACATTTTCCCGGAGAACTCCTACT-CAAgtacagttct ... gtttttacagATAGTTAATCTGATAACAAGGGAGCT
EST: CCACTTGTGGAAGTTGTCGTATGACATTTTCCCGGAGAACTCCTACTCAA ATAGTTAATCTGATAACAAGGGAGCTGGGAGATCATCCAAAAGTTTTCATT
genomic: CCACTTGTGGAAGTTGTCGTATGACATTTTCCCGGAGAACTCCTACTCAAgtacagttct ... gtttttacagATAGTTAATCTGATAACAAGGGAGCTGGGAGATCATCCAAAAGTTTTCATT
ccttgtagatggcccacgcttgctcagtcaatacctgagttgtctgtttttacagATAGTTAATCTGATAACAAGGGAGCTGGGAGATCATCCAAAAGTTTTCATTTGGGATGGGAGAG
tctgttttt CT-rich tract
tgttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtatcgttcttgcctggcctctttgtgtgcttctggttttaggccttgtagatggcccacgcttgctcagtcaatacctgagttgtctgtttttacagATAGTTAATCTGATAACAAGGGAGCTGGGAGATCATCCAAAAGTTTTCATTTGGGATGGGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA