1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gggaggtaacttctggcagttgtgagatttccaacgatgatgactcagtgttaccatgcgtctcgcaagatattaattgttgtggatgttttgactgcagCGAATGAAAAGTCCCATAGGGGTGAAATCTTCCTTACATTCAGATGTGCCTACTGTTCATGAAGGTCAACCCAGTAGAACA
species | Physcomitrella patens |
transcript | PP1S81_172V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGTGGAGGAGGCCAAGAAGCGCAAAGCTACCCTTAAGCAAGCTGCTCAG CGAAT-AAAAGTCCCATAGGGGN-AAATCTTCCT-ACATTCAGAEST: gi|67575071|gb|BJ947895.1|BJ947895
genomic: TTGTGGAGGAGGCCAAGAAGCGCAAAGCTACCCTTAAGCAAGCTGCTCAGgttgtatccc ... ttgactgcagCGAATGAAAAGTCCCATAGGGGTGAAATCTTCCTTACATTCAGA
EST: TTGTGGAGGAGGCCAAGAAGCGCAAAGCTACCCTTAAGCAAGCTGCTCAG CGAATGAAAAGTCCCATAGGGGTGAAATCTTCCTTACATTCAGATGTGCCT
genomic: TTGTGGAGGAGGCCAAGAAGCGCAAAGCTACCCTTAAGCAAGCTGCTCAGgttgtatccc ... ttgactgcagCGAATGAAAAGTCCCATAGGGGTGAAATCTTCCTTACATTCAGATGTGCCT
cagtgttaccatgcgtctcgcaagatattaattgttgtggatgttttgactgcagCGAATGAAAAGTCCCATAGGGGTGAAATCTTCCTTACATTCAGATGTGCCTACTGTTCATGAAGGTCAACCCAGTAGAACA
aagatattaattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggaggtaacttctggcagttgtgagatttccaacgatgatgactcagtgttaccatgcgtctcgcaagatattaattgttgtggatgttttgactgcagCGAATGAAAAGTCCCATAGGGGTGAAATCTTCCTTACATTCAGATGTGCCTACTGTTCATGAAGGTCAACCCAGTAGAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG