1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtgaactgttaattaatatgtgccaaatacttggttttcaacacccagatgctacgttcagaactctgacgttaaccatgccgtgtggttgttacaatagGAGGAGGGATCTGTTGATGGTGGCAGTGATCGTTCCGAAGGTGAAGATGACTTCATTGAAGGGGAGGAGGACGACGCATACTGGGTCTACGACGAACCCA
species | Physcomitrella patens |
transcript | PP1S7_501V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGGTAAAGAATCAAAAGGAAACTCTTGAAAACGAGAAGGAAGACAGCGAT GAGGAGGGATCTGTTGATGGTGGCAGTGATCGTTCCGAAGGTGAAGATGACEST: gi|208399447|gb|DC924877.1|DC924877
genomic: CGGTAAAGAATCAAAAGGAAACTCCTGAAAACGAGAAGGAAGACAGCGATgtaagatggt ... gttacaatagGAGGAGGGATCTGTTGATGGTGGCAGTGATCGTTCCGAAGGTGAAGATGAC
EST: CGGTAAAGAATCAAAAGGAAACTCCTGAAAACGAGAAGGAAGACAGCGAT AAGGAGGGATCTGTTGATGGTGGCAGTGATCGTTCCGAAGGTGAAGATGACEST: gi|19780960|gb|BQ039631.1|BQ039631
genomic: CGGTAAAGAATCAAAAGGAAACTCCTGAAAACGAGAAGGAAGACAGCGATgtaagatggt ... gttacaatagGAGGAGGGATCTGTTGATGGTGGCAGTGATCGTTCCGAAGGTGAAGATGAC
EST: CGGTAAAGAATCAAAAGGAAACTCCTGAAAACGAGAAGGAAGACAGCGAT GAGGAGGGATCTGTTGATGGTGGCAGTGATCGTTCCGAAGGTGAAGATGAEST: gi|162192546|gb|FC371711.1|FC371711
genomic: CGGTAAAGAATCAAAAGGAAACTCCTGAAAACGAGAAGGAAGACAGCGATgtaagatggt ... gttacaatagGAGGAGGGATCTGTTGATGGTGGCAGTGATCGTTCCGAAGGTGAAGATGA
EST: CGGTAAAGAATCAAAAGGAAACTCCTGAAAACGAGAAGGAAGACAGCGAT GAGGAGGGATCTGTTGATGGTGGCAGTGATCGTTCCGAAGGTGAAGATGACEST: gi|162164224|gb|FC342039.1|FC342039
genomic: CGGTAAAGAATCAAAAGGAAACTCCTGAAAACGAGAAGGAAGACAGCGATgtaagatggt ... gttacaatagGAGGAGGGATCTGTTGATGGTGGCAGTGATCGTTCCGAAGGTGAAGATGAC
EST: CGGTAAAGAATCAAAAGGAAACTCCTGAAAACGAGAAGGAAGACAGCGAT GAGGAGGGATCTGTTGATGGTGGCAGTGATCGTTCCGAAGGTGAAGATGAC
genomic: CGGTAAAGAATCAAAAGGAAACTCCTGAAAACGAGAAGGAAGACAGCGATgtaagatggt ... gttacaatagGAGGAGGGATCTGTTGATGGTGGCAGTGATCGTTCCGAAGGTGAAGATGAC
cagatgctacgttcagaactctgacgttaaccatgccgtgtggttgttacaatagGAGGAGGGATCTGTTGATGGTGGCAGTGATCGTTCCGAAGGTGAAGATGACTTCATTGAAGGGGAGGAGGACGACGCATACTGGGTCTACGACGAACCCA
cgttaac putative branch site (score: 1)
ttacaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaactgttaattaatatgtgccaaatacttggttttcaacacccagatgctacgttcagaactctgacgttaaccatgccgtgtggttgttacaatagGAGGAGGGATCTGTTGATGGTGGCAGTGATCGTTCCGAAGGTGAAGATGACTTCATTGAAGGGGAGGAGGACGACGCATACTGGGTCTACGACGAACCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - -cagatgc